Thamnophis sirtalis (common garter snake): 106556989
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Entry
106556989 CDS
T06107
Symbol
CTCF
Name
(RefSeq) transcriptional repressor CTCF
KO
K23195
transcriptional repressor CTCF
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tsr03000
]
106556989 (CTCF)
03036 Chromosome and associated proteins [BR:
tsr03036
]
106556989 (CTCF)
Transcription factors [BR:
tsr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
106556989 (CTCF)
Chromosome and associated proteins [BR:
tsr03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
106556989 (CTCF)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
zf-C2H2_ZN142
Zf-C2H2_ZNF451_C
zf-C2H2_7th_ZNF462
zf-met
zf-C2HE
zf-C2H2_6
LIM
zf-C2H2_15
zf-WIZ
Motif
Other DBs
NCBI-GeneID:
106556989
NCBI-ProteinID:
XP_013931539
UniProt:
A0A6I9Z5S0
LinkDB
All DBs
Position
Unknown
AA seq
733 aa
AA seq
DB search
MEGDMEAEAVETIVEESETFIKGKERKTYQRRREGGQEEDACPMPPHQADGTEVVQEVNA
GVQMVMMEQLDPTLLQMKTEVIEGAVSQDAEATVDDTQIITLQVVNMEEQPINLGELQLV
QVPVPVSVPVATTSVEELQGAYENEVAKGGLQEGEPMICHTLPLPEGFQVVKVGANGEVE
TLEQGELQPQEDPNWQKDPDYQPPTKKTKKTKKSKLRYTEEGKDVDVSVYDFEEEQQEGL
LSDVNAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKC
HLCGRAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMC
DYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARF
TQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVF
HERYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRTHTGEKPYACSHCDKTFRQKQ
LLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCLGPDGVEGENGGEPKKGKR
GRKRKMRSKKEDSSDSEENAEPELDENEEEEETAVEVEAEPEVEVEPVAPTPPPAKKRRG
RPPGKANQPKQPQPTAIIQVKDQSTGAIENIIVEVKKKPEAETVGATPGTQPVAVEAPNG
DLTPEMILSMMDR
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtgacatggaagccgaagcagtcgaaactattgtggaagaatctgaaacgttc
attaaaggcaaagaacggaagacctatcagaggcgccgggaaggcgggcaggaagaggat
gcttgcccgatgccgccccaccaagcagacgggactgaggtggtgcaggaggttaacgcc
ggtgttcagatggtcatgatggaacagctggatccaacgctgcttcagatgaagacagaa
gtcatagaaggtgccgtgtcgcaagacgcagaagccactgtggacgacacccaaataatc
accctgcaggttgtgaacatggaagagcagcccatcaacctgggcgaactccagcttgtc
caagtgcccgtcccggtgtctgtccctgtggccaccacctctgtggaagaacttcagggg
gcctacgaaaacgaggtggccaagggcggcctccaggaaggggagcccatgatctgccac
acactccctttgcccgaaggcttccaggtcgtaaaggttggggccaatggcgaggtggag
accctagagcagggggagcttcagcctcaggaggaccccaactggcagaaagaccccgac
tatcagccccccaccaaaaagacaaagaagaccaaaaaaagcaaactccgctacaccgag
gagggcaaagacgtggacgtgtctgtgtatgactttgaagaggagcagcaggagggcttg
ctttcggacgtcaacgccgagaaagtggtgggcaacatgaagccccctaaaccgacaaaa
attaaaaagaaaggggtgaagaagacattccagtgcgaactctgcagctacacctgcccc
cggcgttcgaacctggaccgtcacatgaaaagccacacagacgagaggccacacaagtgc
cacctttgtggccgagccttccggacagtcacactgctgagaaatcacctcaatactcac
acaggtacgcgtcctcacaagtgccctgactgcgacatggcctttgtgaccagcggagag
ttggttcgacatcgccgctataaacatacccacgagaagccattcaagtgttccatgtgt
gactacgccagtgtggaggttagcaagttgaaacgccacattcgttctcacaccggggaa
cgcccattccaatgcagcttgtgcagctacgccagcagagacacttacaagctgaagagg
cacatgaggacccattctggtgagaagccctacgagtgttacatttgccacgctcgcttc
acccagagtgggaccatgaagatgcacatcctgcagaagcacacggaaaacgtggccaag
ttccactgcccccactgtgacacagtcattgcacgaaagagtgacttaggtgtccatttg
cggaagcagcattcctacattgagcagggcaagaagtgtcgttactgtgatgccgtgttc
cacgagcgatacgcactcatccagcaccagaagtctcacaaaaatgagaagcgcttcaaa
tgtgaccagtgcgactatgcatgccgacaggaacggcacatgatcatgcacaagcgaacc
cacactggagaaaagccttacgcctgcagccattgcgacaagaccttccgccagaagcag
ctgcttgacatgcacttcaagcgctatcacgaccccaactttgtcccagctgccttcgtc
tgctctaaatgtggcaaaacattcacacgccgtaacacaatggccagacatgcagataat
tgtttaggccccgatggggttgaaggagagaacggaggggagcccaagaagggaaaacgt
gggcggaagagaaagatgcgctccaagaaagaggattcttctgacagcgaggaaaatgct
gaaccagaattggatgagaatgaggaggaagaagaaacagcggttgaagttgaggctgaa
ccagaagtagaagtggaacctgtggccccaactcctccaccagccaagaagcggagagga
cgcccaccaggcaaagccaatcaacccaaacagccccagcctacagcaatcattcaggtg
aaagaccagagcactggtgcaattgaaaacattattgtggaagtgaagaagaagcccgaa
gcagagactgttggggctactccaggaactcagccagtggcggtggaagcacccaatgga
gacctcaccccagagatgatccttagcatgatggaccggtga
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integrated database retrieval system
