Thamnophis sirtalis (common garter snake): 106557174
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Entry
106557174 CDS
T06107
Symbol
KATNB1
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
tsr04812
]
106557174 (KATNB1)
Cytoskeleton proteins [BR:
tsr04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
106557174 (KATNB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Katanin_con80
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_HPS5
RMC1_N
eIF2A
Beta-prop_WDR19_1st
Beta-prop_RIG_1st
PROPPIN
WDR54
VPS8_N
Beta-prop_IP5PC_F
Beta-prop_VPS8
Beta-prop_LRRK2
Beta-prop_WDR35_TULP_N
WD_LRWD1
Beta-prop_WDR11_1st
PD40
Motif
Other DBs
NCBI-GeneID:
106557174
NCBI-ProteinID:
XP_013931811
UniProt:
A0A6I9Z7F9
LinkDB
All DBs
Position
Unknown
AA seq
657 aa
AA seq
DB search
MAAAVATKTAWKLQEIMAHSSNVSSLVLGKSSGRLLATGGDDCRVNIWSVNKPNCIMSLT
GHTTPVESVKINTNEELIVAGSQSGSIRIWDLEAAKILRTLMGHKANICSLDFHPYGGFV
ASGSMDTNIKLWDVRKKSCVFRYKGHTGAVRCLRFSPDGKWLASSSDDHTVKLWDLAAGK
IMFEFTGHMGPVNVIEFHPNEYLLASGSSDRTVRFWDLEKFQTVSCIEEEATPVRCVLFN
PDGCCLYAGSQDALRVYGWEPERCFEVVLVNWGKVADLSICNNQLIGVSFTQSTVSSYVV
DLSRITKCGSGLHGLIRDDKPLSPPPSLGASLRRIYERPTTTCSKPQRMKHNSESERRSP
SSEDDKEERESTAEIQNLEDYKEIFQPKNAIIRTPPSKSEPFPAPPEDETAPAKEASRAG
QAADAASPLPGQERADPLQRQPVATSTPITRVEPSVIPAARNEPIGLKASDFLPAVKNQG
LMDIVDEEAVSQIRKGHETMCVVLTSRHKNLDTVRAVWSTGDIKTSVDSAVAINDLSVVV
DLLNIVNQKASLWKLDLCTVVLPQIEKLLQSKYESYVQTGCASLKLILQRFLPLITDILA
APPSVGVDISREERLQKCHMCYKQLKSIGAFVKNRSGLSGRHGSAFRELHLLMAVLE
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgccgtcgccaccaagacggcctggaagctgcaggagatcatggcccacagc
agcaacgtctcttccctggttctgggcaagagttccggccggctcctggccacggggggc
gatgactgtcgagttaatatctggtcagttaacaagcccaactgcatcatgagcctaacc
ggtcacacaacgcctgtggagagcgtgaagattaatacaaacgaagagctcattgtggca
ggatctcagtcaggctccattcggatctgggacttggaagcagctaaaatcctccgcaca
ttaatgggccataaagcaaatatttgcagcctcgatttccatccttatggaggctttgta
gcttcaggctccatggacaccaacattaagctttgggatgtaagaaaaaaaagttgcgtc
ttcaggtacaagggccacacaggagctgttcgctgcctccgcttcagtccggatgggaaa
tggctggcctcttcctctgatgaccacacggtgaagttgtgggacctggcggctggaaag
atcatgtttgagttcacgggacacatgggaccagtaaacgtcattgaattccaccccaat
gagtaccttttggcctcagggagctccgacaggacagtcagattctgggacttggagaag
ttccagacagtgagctgcattgaggaagaagccacacccgtcaggtgcgtgcttttcaac
cccgatggctgctgcttatacgctggcagccaggatgccctgcgggtgtacggctgggag
cccgagcgctgctttgaggtggtcttggtgaattggggcaaagtggccgatttgtctatc
tgtaacaatcagttgattggcgtttcttttacccaaagcaccgtctcctcctatgttgtg
gacctcagcagaatcacaaaatgtgggtctgggctccatgggctgatcagagatgacaaa
cccctgagtcctccaccatctctgggcgcctctctacggcgaatctatgaaaggccaacc
accacctgcagcaagccccagagaatgaaacacaactcagagagcgagaggcgcagtccg
agcagtgaggatgacaaggaagaaagggaatccactgcagagatccagaacttggaggat
tacaaagagatattccagccaaagaacgccatcatacgaactccccccagcaagagcgag
ccctttcctgcccctccagaagacgagacggcacctgcgaaagaagcctcgcgggctggt
caagcagcagacgccgcgtccccgttgccaggccaggagagggcagaccctcttcagagg
cagcctgtagctacctcaaccccaataacgcgggtggagccctcggtgattccagctgcc
aggaatgagcctattgggctgaaggcctcggacttcctgccggccgtgaagaaccagggc
ctgatggacattgtggacgaggaggccgtgtcccagatccggaagggccatgagaccatg
tgtgtggtgctgaccagtcgccataagaatttggacactgtgagagccgtgtggagcacg
ggggacatcaagacttcggtggactctgcggtggccatcaatgacctctcagtggtggtt
gaccttctcaacatcgtgaaccagaaggcgtctctgtggaaactggacctctgcacggtg
gtcttgccacaaatagaaaagctgctgcaaagcaaatatgaaagttacgttcagaccggc
tgtgcgtccctgaagctaattctgcaaaggtttctgcccctgattacggacatccttgct
gcacccccatcggtgggcgtggacatctcccgagaagagaggctccagaagtgccacatg
tgctacaaacaactgaaaagcatcggcgctttcgtcaagaaccggtccggcctcagtggc
cgccatggcagtgccttccgggagctgcacctcctgatggccgtcctcgagtga
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