Telopea speciosissima (New South Wales waratah): 122638304
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Entry
122638304 CDS
T07910
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122638304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tss03041
]
122638304
03009 Ribosome biogenesis [BR:
tss03009
]
122638304
Enzymes [BR:
tss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122638304
Spliceosome [BR:
tss03041
]
Complex A
U1 snRNP components
U1 related factors
122638304
Complex B
122638304
Ribosome biogenesis [BR:
tss03009
]
Eukaryotic type
Pre-60S particles
Helicases
122638304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
SWI2_SNF2
UTP25
Motif
Other DBs
NCBI-GeneID:
122638304
NCBI-ProteinID:
XP_043687137
LinkDB
All DBs
Position
8:63234675..63246968
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AA seq
658 aa
AA seq
DB search
MNIAGRVMPNLNNHEVTARIPAFSNSATMRRPRMLSSSDNGNLSPVEVYCQQHEVTATGD
NVPAPFMTFEATGFPPEILKEIRFAGFSSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLG
YLIPAFIHLMQCRNNSQKGPKVLVLAPTRELATQIQDEVIKFGRSSRVSCTCLYGGAPKG
PQLRELDRGADIVVATPGRLNDILEMKKIDFHEVSLLVLDEADRMLDMGFEPQIRQIVNE
IPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELAANKAITQYVEIVPQLEKQR
RLEEIIKAQEHGSKIIIFCSTKRLCDQLARSIGRIFGAAAIHGDKSQGERDWVLNQFRSG
KSPILVATDVAARGLDIKNIRVVINYDFPMGIGDYVHRIGRTGRAGATGVSYTFFSDQDW
KYAADLIKVLEGANQQVPPELREMAVRGGPIIGKGRNGMSRWDSGGGRWDSGGRGGFVSR
GGRNDFFNGRGNRGRGFGGPGRGRHERGPRDRYESMNGRGRYDNRKADRNRGSSNSRNYS
RSPEMARTWDYDRSRSRSRSRSRSRSWSRSRSRSHSSSSHEAHDRYEKSRGQKNDLGPME
PKFVAPEESRMSPMSTGATEGGSFLGVELAVQQPVGDGTGPGYPVMVAEPGYQPAAEP
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgaatatagcaggcagagtaatgcctaacttgaacaatcatgaagttactgccagaatt
ccagctttttctaacagtgcaactatgaggcgtccaaggatgcttagctcctcagacaat
ggaaatctctcacctgttgaagtatactgtcaacaacacgaagttactgcaacgggtgac
aatgttcctgctcccttcatgacctttgaagccactggtttccctccagagatactcaaa
gagatacgttttgctggcttctcttctccaacgccaatacaggcgcagacatggccgatt
gcactacagagtagggacatagtggccattgccaaaacgggttctgggaagaccttgggc
tatctcattcctgcctttattcatctgatgcaatgccgaaataactctcagaagggtcca
aaggtattggttctggctcctacacgtgagcttgcaacacaaatacaagatgaggttatc
aagtttggtcgttcttctagagtctcatgtacttgtttgtatggtggagctccaaagggt
cctcagcttagagaattagatcgaggggcagatattgttgttgccacccccggtcggctc
aatgatatccttgagatgaagaagattgactttcatgaagtttctctccttgttcttgat
gaggcagatcgaatgcttgatatgggctttgaacctcaaatccgccaaattgtgaatgag
atacccccacgtagacagactctcatgtacacagcgacctggccgaaggaggtcaggaaa
atagcaggagatctactcgttaatcctgttcaggtgaacattggcagtgttgatgaactt
gcagcaaacaaggccatcacacagtatgtggagatagtcccccaattggagaaacagagg
cgcttagaagagattattaaagcccaagaacatgggtcgaagatcataatcttctgctca
acgaagaggttgtgtgaccagcttgcacgcagtattggccgcatttttggtgctgctgca
attcatggagacaaatctcagggtgagagggactgggttctcaatcagttccggagtggg
aagtctccaatactggttgccacagatgtggctgctcgagggcttgacattaagaacatc
agggttgtgatcaactatgattttccaatgggaataggagattacgtccaccgaattgga
agaactgggagggctggtgcaacaggggtttcatataccttcttttctgatcaggattgg
aagtatgcagctgatctgataaaggttttggagggggccaaccagcaagttccacctgaa
ctgcgagagatggctgtacgtggtgggcccatcattggcaaggggcggaatgggatgagt
cgttgggattctggtggtgggcgttgggattctggaggtcgtggtggctttgtttcccgt
ggtgggaggaatgacttttttaatggaaggggaaatcgtgggcggggatttggtgggcct
ggtagggggaggcatgaacggggaccacgtgatcgttacgaaagtatgaatgggaggggg
cgatatgataatagaaaagcagataggaatcggggtagcagtaatagcaggaattacagt
cgcagccctgaaatggctcgcacctgggattatgacagaagcagaagcagaagcagaagc
cggagcaggagcaggagttggtcccgtagtcgcagtaggagccacagcagtagcagccat
gaggcccatgaccgatatgagaaatcacgtggacagaagaatgaccttggtcctatggaa
ccaaaatttgttgctccagaagaatcaagaatgtcccccatgtccactggagcaacagaa
ggtggctcattcttgggagttgagcttgcagttcagcagcctgtaggtgatggtactgga
cctggttatcctgtgatggtagcagagccaggttatcagccagcagctgaaccttag
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