KEGG   Telopea speciosissima (New South Wales waratah): 122639338
Entry
122639338         CDS       T07910                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 4-like isoform X1
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
tss  Telopea speciosissima (New South Wales waratah)
Pathway
tss03020  RNA polymerase
tss03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tss00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    122639338
  09124 Replication and repair
   03420 Nucleotide excision repair
    122639338
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tss03021]
    122639338
   03400 DNA repair and recombination proteins [BR:tss03400]
    122639338
Transcription machinery [BR:tss03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     122639338
DNA repair and recombination proteins [BR:tss03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      122639338
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 122639338
NCBI-ProteinID: XP_043688101
LinkDB
Position
9:complement(1374809..1380847)
AA seq 239 aa
MAEKGGKGFSLPKERKLSSKSPSKKEASLKGKDGSSKKGRRKVHFETSDSEDSPTARIRS
SSKSGGKILFESPVAKGDGSKGGKNDKTGKTGGKGTVPKEPTVLELNVEEELPKDAKCLM
DCEAAVLLQGIQDQQASLSEDPTFKMPESFDKGLLYAKAGNHYTSHQSVRRALQTLKRHD
ISDGEVWSSTQMICMIANICPESVDEVFALVPSLKTNRHKIEEPIKDAFYELAKCKNFD
NT seq 720 nt   +upstreamnt  +downstreamnt
atggcggagaaaggtggaaaaggattctcgctgccgaaagaacgaaagctttcatcgaaa
tcccccagtaagaaggaagcttcactgaaagggaaggatggctcatcaaagaagggaagg
aggaaggttcactttgagacttcggattctgaagattcgccaacagcaaggatcagaagt
tcatcaaaatcaggtggtaaaatcttgtttgagagccctgtagccaaaggagatggcagc
aaaggagggaagaacgataagacaggaaagactggtggcaagggcactgtgccaaaggaa
ccaactgttctagagttgaatgtggaagaagagcttccgaaggatgcaaaatgcctgatg
gattgtgaggcagcagtccttttacaagggatccaggatcagcaagccagtctgtctgag
gatccaacttttaaaatgccagaatcatttgacaaaggactgctgtatgccaaagctggt
aaccattatacgagtcatcagtctgtgagacgagccctacaaacactcaaaagacacgac
atctctgatggcgaggtttggagctcaacacaaatgatatgcatgatcgccaacatttgc
cctgaatcagttgatgaagtgtttgctcttgtcccatctttgaagactaacaggcacaag
attgaggaacccataaaagatgcattttatgaattagccaagtgtaaaaacttcgactaa

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