Telopea speciosissima (New South Wales waratah): 122639658
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Entry
122639658 CDS
T07910
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122639658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122639658
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122639658
mRNA degradation factors
5'-3' decay
Decapping complex
122639658
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_HPS5
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
Beta-prop_EML_2
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
122639658
NCBI-ProteinID:
XP_043688475
LinkDB
All DBs
Position
9:complement(934366..954091)
Genome browser
AA seq
1413 aa
AA seq
DB search
MASAGNPNQPATFDMQKFFKPSTNPSPSNPSNQNASPFPASSYPTPPSSYPPPTGPFSYP
PQTAPFHNPHYLPPYTQEQFSGMHHQRPIPYATPNLQPPPYLASPNPNHGARLMALLGTS
APSNMELPSPTMPSPSAASSMAATSEFPLHTNPPILPSMPSAPPLSMAASQAAPMRLPSS
KLPKGRHLIGDNVVYDVDVRLQGEVQPQLEVTPITKYVSDPGLVVGRQIAVNRTYICYGL
KLGAIRVLNINTALRSLLRGHTQRVTDMAFFAEEVHLLASASIDGRVFVWKINEGPDEED
KPQITGKIVIAIQIIGEGDSIHPRVCWHSHKQEILVVGIGKFVLKIDTTKVGKGEVFSAE
EPLKCSIDKLIPGVQLVGEHDGEVTELSMCQWMTSRLASASTDGTVKIWEDRKALPPVVL
RPYDGQPVNSVTFLTAPNRPDHINLITAGPLNREVKIWASASEEGWLLPSDAETWRCTQT
LELRSSVEPRIEEAFFNQVVALPRAGLILLANAKKNAIYAIHIEYGPNPFSTRLDYIAEF
TVTMPILSLTGTSDYISEREHVVQVYCVQTQAIQQYALDLSQCFPPPLDNVGLEKTESSA
SRSLDTTISDGLATSEPSNLGTSTEMPVGNDAPKPTVLVSSSESVPAASYPVISDSAEVP
SLRELVSSSIESKPSALVPATSDADNIHVVAQPLPLSPRLSGKLSGFRTQSNCFEPGSQL
DRGSDLTVHDYSVDRRVDNVITNLPDIPSLDEISRKDESKVAQNDNTVMPNPPVMFKHPT
HLVTPSEIFSMAVPPAENSRVSQGMKRGEAKVQDVVVNNDTGSVEVEVKVIGETGSSQND
EFDSHKEPHILLAEKLEKSFCSQASDLSMEMMRDCCETFGVETRQVNDSCVTEVVDRPPN
AGEEELQDSSKEAHGKVSESNAATTVPQTPAPATKGKKQKGKNSQISGPSSASPSPFNST
DSSNEPGSSSVGPSTEAAVAQIMAMQETLNQLITMQREMQKQLSVMVAVPVTKEGKRIEA
ALGRSMEKVVKANNDALWARLQEENAKHEKMERDRSQQMTSVITNYMNKDLPAMLEKTVK
KEMSSVGPAVARAITPVVEKTLSSVVAEAFQRGVGDKAVSQLEKSVNSKLEATVARQIQA
QFQTSGKQALQDALRSTFEASVIPAFEMSCKAMFEQIDAAFQKGMVEHAAAAQQQFESAH
SPLAIALRDSISSASSITQTLTGEIADGQRKILALAAAGANSKAVNPLVTQLSNGPLGGL
HEMAMSIQQVEAPLDPTKELSRLISEHKYEEAFIAALHRSDVSIVSWLCSQVDFRGILSM
VPQPLHQGVLLSLLQQLSCDISKETSRKLTWMTDVVIAINPTDSMIAMHVRPIFEQVYKV
LAHHITLPTVTSSDVTSMRILMHIINSMLVSCK
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgctgggaatccaaatcaacctgcgaccttcgatatgcagaagttcttcaaa
ccctcgacaaacccttctccttcaaaccctagtaatcaaaacgcgtcaccatttccagcg
tcttcttatcctacaccaccttcttcttatcctccacccactggccctttctcctaccca
ccccagactgctccattccataatcctcactacctccctccttacacacaagagcagttc
tctgggatgcaccaccagaggcccatcccctatgctacacccaatctccaaccacctcct
taccttgcctctcccaatcctaaccatggagccagactgatggctctactgggcaccagc
gctccatccaacatggaattgccgtctccgacaatgccgtcaccatctgcagcgtcttca
atggctgctacatcagaattccccttgcataccaatccccccatcttaccttcgatgccc
tcggcgccgcccctcagcatggcggcttcccaggcggccccaatgaggttaccaagcagc
aagcttcccaagggccgacatttgattggcgacaacgtagtctatgatgtcgacgtcagg
ttgcagggcgaggtccagccccagctcgaagtcaccccaatcaccaagtatgtctccgat
ccgggacttgtcgtcggccggcagattgcagttaacaggacatatatatgctatggactg
aagttgggggctatccgggtcctcaatataaacactgccttaagatctttgcttcgaggt
cacactcagagggtcacagacatggctttctttgctgaggaagttcaccttttagccagt
gcgagcatagatgggagggtttttgtatggaagattaatgaaggtccagacgaagaagat
aagccacaaattactggaaaaattgttattgccattcagataattggagagggggattcg
atacatccacgagtctgttggcactctcacaaacaggagattttggtagtaggtattgga
aaatttgtgctgaaaattgatacaacaaaggttggaaaaggtgaagtgttttcagctgaa
gagcctctcaagtgttctattgataagctgatcccgggtgtccaacttgttggtgaacat
gacggggaagtgactgagttgtcaatgtgccaatggatgaccagtcgcttagcatctgca
tcaacggatggcacggtaaagatatgggaagaccgtaaggcactgccccctgtggtattg
aggccatatgacggtcagccagttaactcggtcacattcttaactgcacctaaccgccct
gatcacattaatctcatcacagcggggcctctgaatcgggaagtgaagatatgggcctca
gcaagtgaagaaggttggctgttacctagtgatgctgaaacatggcggtgtactcagaca
ttggagttaaggagttccgtggaaccccgaatcgaggaggcattctttaatcaagttgta
gccttgccacgtgcgggcctcattcttcttgcaaatgccaagaagaatgctatatatgcc
atacacatagaatatggcccaaacccgttctcaactcgcctggattatattgcagagttt
actgtcacaatgcctattttgagtcttactggtacgagcgactacatatctgaaagggag
catgtggttcaggtttactgtgtccagacgcaggctattcaacagtacgctctggatctg
tctcagtgcttcccaccgccactggataatgtgggattagaaaagacagagtctagtgct
tctcgttctctggatacaactatttcagatggattggctacatcagagccatctaatctg
ggtacatctactgagatgcctgtaggaaatgatgcacccaaaccaactgtcttagttagc
agttctgaaagtgtacctgctgccagttatcctgtaatctcggattctgccgaggttcct
agcttacgcgaattggtgtcatcaagtattgaatctaaaccaagtgctttagtgcctgca
acctctgatgccgataatatccatgttgtggcacagcctcttcctttgagtccgaggtta
tcagggaaactctctggttttagaactcaatcaaattgctttgagcctggttcccaacta
gatcgtggcagtgacttgacagttcatgattattcagtagataggagagtggacaatgtt
attacaaatttaccagatattccttccttggatgaaatctctagaaaggatgaaagcaaa
gttgcacagaatgacaatactgtgatgcctaatcctcctgtgatgttcaaacatcctacc
catttggtaactccatcagagatattttcaatggctgttccacctgctgagaatagtcgg
gtcagtcaaggaatgaagaggggtgaggcaaaggtacaagatgtggttgtcaacaatgat
acagggagcgtcgaggtagaggttaaagtcattggtgagactgggtctagtcagaatgat
gagtttgattcccataaagaaccacacattcttcttgcagagaaattggagaaatccttc
tgctcccaggcttcggatcttagcatggagatgatgagagactgctgtgaaacttttggt
gtggagactcggcaggtcaatgattcttgtgttactgaagtggtagaccggcctccaaat
gctggtgaagaagaattgcaagattcttcgaaagaagcacatggaaaggtttctgagtcg
aatgcagctacaacagttccacagactccagcaccagctacaaaagggaagaaacagaag
ggtaaaaactctcaaatatcaggaccttcatctgcttctccaagccctttcaattccaca
gattcttccaatgaaccgggtagcagttctgttggtccttctacagaggctgctgttgca
caaataatggccatgcaagagacattgaaccagctaattaccatgcaaagagaaatgcag
aagcagttgtcagtgatggtggctgtcccagtcaccaaagaaggcaaaagaattgaggca
gctctgggcaggagcatggagaaagttgttaaggccaacaatgatgctctttgggctcgg
cttcaagaagagaatgcaaagcatgagaagatggaacgtgaccgttcacagcagatgact
agtgtcatcaccaactatatgaataaagacttgccggccatgctagagaaaacagtgaag
aaggaaatgtcttctgtaggaccagctgtagctcgtgctattactccggttgtggagaaa
acactttcttcagttgttgcagaggcattccagagaggggttggagacaaggctgtgagt
cagttggaaaaatcagttaattcaaaactggaagcaacagtagctaggcaaatccaggct
caattccaaacttctggaaagcaagctcttcaggatgcattaagatctacctttgaagct
tcagtaattccggcatttgaaatgtcatgcaaagccatgtttgagcaaattgatgctgca
tttcagaaagggatggttgaacatgcagctgcagctcagcagcagtttgagtctgcacat
tctcctttggctattgctttgagggattcaattagctcagcatcatcaattactcaaacc
ttgactggagagattgctgatggccagcgtaagattttagcccttgcagctgcaggagcg
aactcaaaggcagtaaatcctttggttacacaacttagcaacggtcctttaggtggtctc
catgagatggccatgtctattcaacaggttgaggcacctttggatcctactaaagagcta
tcgagattgatatctgaacacaaatatgaggaagcatttattgcagctttgcatagaagt
gatgtttctattgtatcatggctttgttctcaggttgattttagaggtatcttgtcgatg
gtgcctcagcctctgcatcaaggagttctactgtcccttctccagcagttatcctgcgat
atcagcaaggaaacatcgcgaaaactgacatggatgacagacgtcgttattgccataaat
cctacagactcgatgattgcaatgcatgtgaggccgatttttgagcaggtctataaagta
ctggcccatcacatcaccttaccaactgtgacttccagtgatgttacaagcatgcggatc
cttatgcacatcatcaactccatgttggtgtcctgtaaatga
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integrated database retrieval system
