Telopea speciosissima (New South Wales waratah): 122639835
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Entry
122639835 CDS
T07910
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03020
RNA polymerase
tss03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122639835
09124 Replication and repair
03420 Nucleotide excision repair
122639835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tss03021
]
122639835
03400 DNA repair and recombination proteins [BR:
tss03400
]
122639835
Enzymes [BR:
tss01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122639835
Transcription machinery [BR:
tss03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122639835
DNA repair and recombination proteins [BR:
tss03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122639835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
122639835
NCBI-ProteinID:
XP_043688768
LinkDB
All DBs
Position
9:complement(13682856..13693443)
Genome browser
AA seq
1187 aa
AA seq
DB search
MEEENDLIQDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIE
IRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL
YVDVTKRIIKKGHDCEEVTETQEFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD
QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSSMFVRM
LSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELL
RPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKK
AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQK
CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL
RRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPIL
EFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGV
IRDIRLKELRLYTDYGRCSRPLFIVDKQRLLIKKKDVRALQQRESPDDGGWHDLVAKGFI
EYIDTEEEETTMISMTINDLISARLHPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ
SPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINS
IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM
GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQASRYTRRDHSTSLRHSE
SGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG
ITPDIIMNPHAIPSRMTIGQLIENIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ
MRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK
NKTDIVQVHIPYACKLLFQELMSMAIAPRMLTSELKTIKDKKKVTLN
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagaaaacgatcttattcaagatgaagaagaagagatcacgcaggaagatgcg
tgggctgtaatcagtgcttacttcgaggagaaaggtctcgtgcgtcaacagctcgattcc
ttcgatgagttcatccagaataccatgcaagaaatcgtcgatgagtctgctgatattgag
attcggcccgaatctcagcataaccctggccgccagtctgatttcctcgagactatctat
aagataagctttggacaaatatacttgagcaagccaatgatgacggagtcggacggagaa
acagctactttgtttcccaaggctgcaaggttgaggaacctcacttattcggctcccttg
tatgtggatgtcacaaagagaatcataaagaaagggcacgattgtgaagaagtaactgag
acgcaggagttcaccaaagtctttattggaaaggttcctataatgctgcggtcgagttat
tgtacattatatcaaaattcagagaaggatctaacagagctcggggagtgcccatatgat
cagggtggatactttattattaatggaagtgaaaaagttctgattgcgcaggagaagatg
agcacgaatcatgtgtacgtgtttaagaagaggcagcccaacaagtatgcctatgtgggt
gaggtccgttcaatggcggaatctcagaaccggccacccagcagtatgtttgtgcggatg
ctttctcgggctagtgccaaagggggttcctctgggcagtacattcgtgctacccttcct
tatatccgaacagaaatcccaataattattgtctttagggcgctagggtttgttgctgat
aaagatatattagagcatatatgctatgacttcgctgatactcagatgatggagttactt
cgaccatccttggaagaagcatttgtgatccagaatcaacaggttgcgttggattacatt
gggaagagaggttcaacagtgggtgtcactcgggaaaagaggattaaatatgccaaagag
atccttcagaaagaaatgcttcctcatgttggtgtcggagaatattgtgaaacgaagaag
gcttactattttgggtacatcattcacaggcttctactatgtgcacttggccggagggca
gaagatgatagggatcattatggcaacaagaggctagaccttgctggacctttgcttgga
ggcctgttccgcatgctgttcagaaagttgacacgagatgttagaggctatgttcagaag
tgtgttgataatgggaaggatgttaacttgcaatttgctataaaagcgaaaacaatcact
agtggccttaaatattcccttgctacggggaattggggacaggcaaatgctgctggtaca
agagctggagtttcacaggttttgaaccgtttgacatatgcatctaccctgtctcacttg
cgaaggttaaactctcctattgggcgtgaagggaaattggcaaaacccaggcagttgcac
aattcccattgggggatgatgtgtcctgcagaaactccagaaggtcaggcttgtggactt
gtgaagaatttggcactaatggtgtacattaccgtgggatcggcagcgaatcccatactc
gagtttttagaggaatggagtacagaaaattttgaggaaatatcccctgctgttattcct
caagcaaccaaaatctttgtcaatggttgctgggttggcattcatcgtaatcctgagctt
ttggtgaagacattgagacaactgagaagacaggtggatgtcaatactgaagttggtgtt
atccgagatattcgtttgaaagagcttcgactttatactgattatggccgttgtagccgt
cctttgtttattgttgataaacaaaggttacttataaagaaaaaagatgtccgggccttg
caacaaagggaatccccggatgacggtggctggcacgatcttgtggcaaaaggattcata
gagtatatagacacagaagaagaagagactaccatgatttccatgactattaatgacctt
ataagtgcaaggctccatcctgaggaggcttattccgaaacatatacccattgtgaaatc
catccatctctgattttgggtgtctgtgcgtctattatcccgtttcctgaccataaccag
tcccctcgtaatacgtaccagtcggcaatgggcaaacaagccatggggatttatgtcaca
aattaccaattgcgaatggatacacttgcctatgtgctatactatccccagaaacctctt
gttactactcgtgccatggagcacttgcacttcaggcagttgccagctggcattaattct
atcgttgctatcgcctgctattccggatataaccaagaagattctgttatcatgaaccaa
tcttcgatagaccgtggattcttccgatcgttgttcttccgttcatacagggatgaggaa
aagaagatgggaacattagttaaggaggattttggccgtccaaacagggaaaatactatg
gggatgcgacatggatcttatgataaattagatgatgatggtcttgcccctcctggcaca
agggtctcaggtgaagatgttattattggaaagacaactccaattgctcaggatgaatct
caagggcaagcttcacggtacacacgccgtgatcatagcacaagcctaaggcacagtgaa
agtgggatggtagatcaggttctgttgacaacaaatgctgatggtttgaggtttgtgaaa
gtaagaatgaggtccgtccgtatacctcagattggagacaagttcagcagtcgacatggt
cagaagggaacagttggtatgacatacacacaagaagacatgccatggactgtggaagga
attaccccagatattattatgaacccacatgctattccttctcgaatgacaatcggccag
ctcattgagaacattatggggaaggttgcagctcacatggggaaggagggggatgctact
ccttttactgatgtcacagtggacaatatcagcaaagcgctccacaaatgtgggtatcag
atgcgtggttttgaaaccatgtacaatggtcatacaggccggaagttgactgcgatgata
ttcctgggtccgacgtactatcagagactgaagcacatggtggatgataagatccattca
cgtgggcgtggtccagtacagattcttacaaggcagcctgctgaaggacggtctcgtgat
ggaggtctccggtttggggagatggaacgagattgtatgattgctcatggggctgcacac
tttctcaaagagaggttgtttgaccagagtgatgcctacagagttcatgtttgtgagcgt
tgtgggctgattgctattgccaacctaaagaagaactcgtttgaatgtagaggttgcaag
aacaagaccgacattgttcaggtccacataccttatgcatgtaagctgcttttccaagag
ctcatgtcaatggccattgccccgaggatgctcacaagtgaattgaaaacaatcaaagat
aagaagaaagtgactttgaactga
DBGET
integrated database retrieval system
