Telopea speciosissima (New South Wales waratah): 122640051
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Entry
122640051 CDS
T07910
Name
(RefSeq) vacuolar sorting protein 18 isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
122640051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tss04131
]
122640051
Membrane trafficking [BR:
tss04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
122640051
Hops complex
122640051
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_11
zf-RING_Vps41
zf_RING_Vps8
Nup54_57_C
RPN1_RPN2_N
zf-RING_UBOX
zf_RING_Vps8_fungal
zf-C3HC4
zf-RING_2
zf-rbx1
zf-ANAPC11
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
122640051
NCBI-ProteinID:
XP_043689096
LinkDB
All DBs
Position
9:complement(9977303..10049203)
Genome browser
AA seq
987 aa
AA seq
DB search
MDSGRHVFSVDLLERYAAKGRGVITCMAAGNDVIVLGTSKGWIIRHDFGVGDSSDLDLSA
GKTGEQPIHRVFVDPGGSHCIATVLSSGGAETYYTHAKWSKPRLLSRLKGLVVNAVAWNR
QQITEASTREVILGTDNGQLYEIAVDEKDKKEKYMKLLFELTELPEAFMGLQMETASVGN
ATRYYVMAITPTRLYSFTGIGSLDTVFASYSDRAVRFMELPGEIPNSELHFFIKQRRAEH
FAWLSGAGIYHGDLNFGAQHSSADGDENFVENKALLDYSKLGEGSEAVKPRSLAVSDFHF
LLLIGDKVKVVNRISEQIMGDLQFDHASESVSRGIIGLCSDATAGLFYAYDQNSIFQVSV
HDEGRDMWRVYLDMNEYAAALAHCRDPFQRDQVYLVQGETAFSAKDFFRAASFFAKINYI
LSFEEITLKFISVGEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLED
DTASRNQNVEYQSGIKEFRAFLSDCKDVLDDATTMRLLESYGRVDELVYFASLKEHYEIV
VHHYIQQGEAKKALEVLQKPGVPIDLQYKFAPDLIMLDAYETVESWMVTNNLNPRRLIPA
MMRYSSEPHAKNETHEVIKYLEFCVHRLLNEDPGVHNLLLSLYAKQEDDSALLRFLQCKF
GKGQPNGPEFFYDPKYALRLCLKEKRMRACVHIYSMMSMHEEAVALALKVDTELAMAEAD
KVEDDEDLRKKLWLMVAKHVIEQEKGAKRENIRKAIAFLKETDGLLKIEDILPFFPDFAL
IDDFKEAICSSLEDYNKQIEQLKQEMNDATHGADNIRNDISALAQRYAVIDRDEECGVCR
RKILTVGGTRQVARGYTSVGPMAPFYVFPCGHAFHAECLIAHVTGCSNQAQAEFVLDLQK
QLSLLGGESTNHPNGSVIEAPIGSMIHADKIRSQLDDAVASECPFCGDLMIREISLPFIQ
PEEEQQVTSWEIKPYNLGSQRSLSISI
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggattcggggaggcatgtattttcagtagatctccttgaaagatatgctgcaaagggg
cgtggtgttattacatgcatggctgctgggaatgatgtcatcgtgttgggaacgagtaaa
ggatggattattagacatgattttggagttggagactcttctgatctggacctctctgct
ggtaaaactggggagcaacccatccacagagtttttgttgatcctggaggaagccactgt
atagctactgttcttagtagcgggggtgctgagacatattatacacatgcaaagtggagt
aagccccgtttgttgagcagattaaaaggacttgtggtgaatgctgttgcctggaacaga
caacagataacagaagcttccacacgggaagtcattcttggtactgataatggccaactt
tatgagattgccgttgacgagaaggacaagaaagagaagtacatgaagttgttatttgag
cttactgagctcccagaagccttcatgggtttgcagatggaaacggctagtgtaggtaat
gcaaccagatattatgtgatggctattactcctactcgactttactctttcactggcatt
ggatcattggatactgtctttgctagttattcagatcgagcggtgcgttttatggaactt
cctggtgaaataccaaatagtgaactgcatttcttcatcaagcaaagaagagctgaacat
tttgcctggctttcgggggctggtatttatcatggtgatctaaactttggagcacagcat
agttctgctgatggagatgaaaactttgtggagaacaaggctctattggactactcaaaa
ttgggtgaaggttctgaagcagttaaacctagatctcttgcagtttctgactttcatttt
ctacttttaattggggataaggttaaggttgtcaatagaattagtgaacagattatgggg
gacctacagtttgatcatgcatcagagtcggtttcaagaggtatcattggactctgtagt
gatgctactgctggattgttctatgcatatgaccaaaactccatattccaggtttctgtc
catgatgaaggccgagatatgtggcgtgtgtatcttgacatgaatgagtatgctgcagct
ttagcacactgccgggatccattccaaagggaccaagtttatttagtgcagggtgaaact
gctttctctgcaaaagatttctttagagcagcatcattttttgcgaaaattaactatata
ttgtcatttgaggagatcactctgaagtttatcagtgtgggagaacaggatgcattgaga
actttcttattgaggaagcttgataatcttgcaaaggatgataaatgccaaataacaatg
atttccacttgggctactgagttgtacttggacaagatcaaccgactgcttttggaggat
gacacagcttcacggaatcagaatgtagagtaccagtctggcattaaggagttccgtgct
ttcctgagtgactgcaaggatgtccttgatgatgcaacaacaatgagattattagagagc
tatggaagagtggatgagctggtctattttgctagtctaaaggagcattatgagatagtt
gttcatcactacattcagcaaggggaagcgaagaaggctctggaagtgcttcaaaagcct
ggcgttcccatagatctgcagtacaagtttgctccagatcttatcatgcttgatgcatat
gagacagtcgagtcatggatggtcacaaacaacctaaatccaagaaggctgattcctgca
atgatgcgttattcaagtgaacctcatgcaaagaatgaaacacatgaagttatcaaatat
ttggaattctgtgtccatcgtttgcttaacgaagatcctggtgtgcacaacttgttgctc
tcattgtatgcaaagcaggaggatgatagtgcacttctgcgtttcctacaatgcaagttt
ggcaaaggacaaccaaatggccctgagttcttctatgatcccaaatatgcactgcgcctt
tgcctcaaggaaaagcgaatgcgtgcctgtgtccatatatatagcatgatgtccatgcat
gaagaggcagtcgctcttgctttaaaggttgacacagagcttgccatggcagaagctgac
aaggttgaagatgatgaagacttgaggaagaagctttggcttatggttgcaaagcatgta
attgaacaggagaaaggagctaaaagggagaacatacgaaaggcaatagcatttctcaaa
gaaactgacggccttctaaaaatagaggatattctaccattctttccagactttgctttg
attgatgatttcaaggaggcaatttgttcatcattggaggattacaataagcagatcgaa
cagctgaaacaggaaatgaatgatgcgacacatggtgcggacaatatcagaaatgatatc
agtgcccttgctcaaagatatgctgtcattgatcgtgacgaggagtgtggggtttgtaga
cggaaaatcttaacagttggggggacacgtcaggtggcaaggggctatacttcagtagga
ccaatggcccctttttatgtctttccatgtggacatgcttttcatgcagagtgtttgatt
gcacatgtgactgggtgtagcaaccaagctcaagcagaatttgtattggatttacagaag
cagctcagtttgttgggtggtgaatctacaaatcatccaaatggtagtgttattgaggca
cccattggcagtatgatacatgctgataagatacgttcacaattggatgatgccgtagcc
agtgaatgtccattttgtggtgatctgatgatccgggagatctccttgcctttcatccaa
cctgaggaggaacaacaggttacttcttgggagattaaaccgtataaccttggaagccag
aggagtctgtctatatctatatga
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