Telopea speciosissima (New South Wales waratah): 122640175
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Entry
122640175 CDS
T07910
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss04120
Ubiquitin mediated proteolysis
tss04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122640175
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
122640175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tss04121
]
122640175
Enzymes [BR:
tss01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122640175
Ubiquitin system [BR:
tss04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122640175
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
122640175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
zf-C3HC4_2
Beta-prop_TEP1_C
EIF3I
Beta-prop_HPS5
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
zf-C3HC4
Beta-prop_CAF1B_HIR1
WD40_RFWD3
WD40_like
zf-RING_UBOX
zf-C3HC4_3
Beta-prop_WDR75_1st
zf-RING_2
Beta-prop_DCAF12
DUF1664
zf-C3HC4_4
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
U-box
zf-RING_5
zf-rbx1
Beta-prop_IFT122_2nd
Motif
Other DBs
NCBI-GeneID:
122640175
NCBI-ProteinID:
XP_043689265
LinkDB
All DBs
Position
9:3795054..3815933
Genome browser
AA seq
692 aa
AA seq
DB search
MAESSMGALVPSVKSEPKSSSAVAVSLEAVDEAATVGGGEEAPLTAATTAMAETAVAEFD
KDFLCPICMQVIKDAFLTACGHSFCYMCIITHLHNKNDCPCCGHYLTNNQLFPNFLLNKL
LKKTTARQISKTTSPVEHLRRALQQGCEVPLKELDNLLSILAEKKRKMEQEEAETNMQIL
LDFLNSLRKQKLEELNEVQNDLQYIKEDISAVERHRIELYRATERYSVKLRMLHDDPMAT
KAWPSSMDKHGSGLVSSARSAQGGMSSGNFQNKKTDVKAQVSSQGLQRKDAFISASDPQN
VVTHSGLAVARKRRVHAQFNDLQDCYLQKRRFWGSQSHKQEERNTHATSREGYHAGLEDF
QSVLTTFTRYSRLRVIAELRHGDLFHSANIVSSIEFDRDDELFATAGVSRRIKVFEFSSV
VNEPADVHCPIVEMSTRSKLSCLSWNKYTKNHIASSDYEGIVTVWDVNTQQSVMEYEEHE
KRAWSVDFSRTEPSMLVSGSDDCKVKIWCTNQEASVLNIDMKANICCVKYNPGSNIYVAV
GSADHHIHYYDLRNYSHPLHVFSGHRKAVSYVKFLSNNELASASTDSTLRLWDVKENLPV
RTFRGHTNEKNFVGLTVNSEYIACGSETNEVFVYHKAISKPAAWHRFGSSDLDDTDDDAG
SYFISAVCWKSDSATMLTANSQGTIKVLVLAA
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggctgagtcatcaatgggggctctcgtgccatcagtgaagtcggagccgaaatcttcg
tcagcggtggcagtatcgttggaggcagttgacgaagctgcaacagtaggaggaggcgaa
gaagctccactaacagcggcaacaacagcgatggcggagacggctgtggctgagttcgat
aaggacttcctgtgtccgatatgcatgcaggtcatcaaagacgctttcctcacggcttgt
ggtcacagcttctgctacatgtgtattatcactcatctccacaacaagaacgattgtcct
tgttgtggccactatctgaccaacaatcagctcttccccaactttctcctcaacaagcta
ttgaagaagactactgctcgtcaaatatcaaaaaccacatctcctgtggagcatcttcgt
cgggcattacaacagggatgtgaagtgccacttaaggagctggacaacctattgtctatc
cttgcagagaagaaaaggaagatggagcaagaagaagctgagacaaatatgcaaattcta
ctcgacttcttgaacagcctgaggaagcaaaaactggaagagcttaatgaggtacaaaat
gacctccagtatattaaggaagacattagtgccgtagagagacacagaatagagttatat
cgagcaactgagagatactcagtcaaattgcgaatgcttcatgatgatcctatggcaaca
aaagcttggccttcatcaatggataaacatggcagtggtcttgtatcaagtgctcgtagt
gcccaaggtgggatgagttcaggaaattttcagaacaaaaaaactgatgtaaaggctcaa
gtgagctctcagggactccaaagaaaggatgcttttattagtgcttctgatccgcaaaat
gttgttactcactcaggacttgctgtggctagaaaaaggagggtccatgcacagttcaat
gacctgcaagactgttacctgcaaaagcggcggttctggggtagccaatcacataaacaa
gaggaacggaacacacatgccactagcagagaaggttatcatgccgggcttgaggatttc
caatctgttttgacaaccttcacacgatacagtcgattgagggtcatagcggaactcagg
catggggatcttttccactcagcaaatattgtatcaagcatagaatttgaccgcgatgat
gagttatttgctaccgcaggagtttctcggcgcattaaggtttttgagttttcctcagtg
gtgaatgaacctgcagatgtccactgtcctatagtggagatgtccacacgttccaaactc
agttgcctgagttggaacaagtacactaagaaccatatagccagtagtgattatgagggg
atagtaactgtttgggatgtaaatacccagcagagtgtgatggaatatgaagaacatgaa
aagcgagcttggagtgttgatttttcacgcactgagccatcgatgcttgtgtctggtagt
gatgattgcaaggttaaaatctggtgcacgaatcaggaagcgagcgtactcaacattgac
atgaaagcgaatatctgttgtgtcaagtataaccccggatctaacatctatgtggcggtt
ggttctgctgatcatcacattcactattatgatttgagaaactatagccatccactccat
gtatttagtgggcacaggaaagctgtttcatatgtgaaattcttgtccaacaacgagctt
gcatctgcatctacagacagcacattgcggctatgggatgtaaaggaaaatttaccagtg
cgcacatttagaggccatacaaacgagaagaactttgtgggtctcactgttaacagtgaa
tacattgcttgtggcagtgaaacaaatgaagtgtttgtttaccacaaggcaatatccaaa
cctgcagcttggcatagatttggttcatctgatctggatgatactgacgacgatgccgga
tcctacttcattagtgctgtttgttggaaaagtgattcggcgacaatgttaactgccaat
agtcaaggaactatcaaagttcttgtccttgcagcatga
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