Telopea speciosissima (New South Wales waratah): 122640205
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Entry
122640205 CDS
T07910
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03013
Nucleocytoplasmic transport
tss03015
mRNA surveillance pathway
tss03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122640205
09122 Translation
03013 Nucleocytoplasmic transport
122640205
03015 mRNA surveillance pathway
122640205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122640205
03041 Spliceosome [BR:
tss03041
]
122640205
03009 Ribosome biogenesis [BR:
tss03009
]
122640205
03012 Translation factors [BR:
tss03012
]
122640205
Enzymes [BR:
tss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122640205
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122640205
mRNA cycle factors
Stress granule specific factors
122640205
Spliceosome [BR:
tss03041
]
Complex C
Other components
EJC/TREX
122640205
Ribosome biogenesis [BR:
tss03009
]
Eukaryotic type
90S particles
Helicases
122640205
Translation factors [BR:
tss03012
]
Eukaryotic type
Initiation factors
eIF-4
122640205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-GeneID:
122640205
NCBI-ProteinID:
XP_043689290
LinkDB
All DBs
Position
9:61526877..61538114
Genome browser
AA seq
414 aa
AA seq
DB search
MAAATASAAPSNWPARRNGKGPIAEDDNLVFETSHGVEAITSFDQMGIKDDLLRGIYQYG
FEKPSAIQQRAVLPIIKGRDVIAQAQSGTGKTSMIALTVCQMVDTATREVQALILSPTRE
LAAQTEKVILAVGDFINIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLR
TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEITSKFMTDPV
RILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKM
RSNNFTVSSMHGDMPQKERDAIMAEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNN
RELYIHRIGRSGRFGRKGVAINFVRNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgcaacagcctccgctgctccatcgaactggcccgctcggcgtaacggtaag
ggacccattgccgaggacgataacctagtgttcgaaactagtcatggcgttgaggctatc
acatcgttcgatcagatgggtatcaaagacgatcttctccgagggatttatcaatacggg
ttcgagaagccgtcggcgatacaacagagagcggttttgcctatcatcaaaggtcgtgat
gtgattgctcaggcacaatctggtactggcaagacctctatgattgccctcactgtctgc
cagatggtcgatacggcaaccagagaggtccaagctttgatcttgtcaccaactagagaa
cttgctgcacagactgagaaagtaatattagcggttggtgatttcataaatatacaagcc
catgcttgtattggaggcaaaagtgtaggtgaagatataaggaagctcgagtatggagtc
catgtagtgtctggaacgccaggcagagtctgtgacatgatcaagagaagaacgctacgt
acaagggccatcaaattattagtccttgatgaatctgatgagatgttgagcagagggttt
aaagatcaaatttatgatgtttacagatatcttccaccagagcttcaggttgtattgatt
tctgcgacacttcctcatgagatactggaaatcacgagcaaatttatgacagatcctgtt
aggatccttgtgaagcgtgatgagttgactttagagggcatcaaacaattcttcgttgct
gttgaacgagaagagtggaagtttgatactttatgtgatctttatgatactcttaccatc
acccaggctgttattttctgcaacacaaagcgtaaggtggattggctgacagagaagatg
cgcagcaataacttcacagtctcctcaatgcatggagacatgcctcaaaaggagcgggat
gctataatggcagagttcaggtcaggaacaacccgtgtgctgatcactacagatgtttgg
gctcgggggcttgatgttcaacaggtgtctttggtgattaattatgacttgcccaacaac
cgtgagctctacattcacaggataggtcgatctggccgttttggacggaagggtgttgca
ataaactttgtccgcaacgatgacataaggattctcagggatatagaacagtattacagc
acacagattgatgagatgccaatgaatgtagctgatctaatttaa
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