Telopea speciosissima (New South Wales waratah): 122640347
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Entry
122640347 CDS
T07910
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122640347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tss03021
]
122640347
03019 Messenger RNA biogenesis [BR:
tss03019
]
122640347
Transcription machinery [BR:
tss03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122640347
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122640347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
122640347
NCBI-ProteinID:
XP_043689442
LinkDB
All DBs
Position
9:7075270..7095515
Genome browser
AA seq
1069 aa
AA seq
DB search
MEEERFVSSRENPRNLGFLQERGPGTSSNINNSKVMTNDLLQKPPPPVLDRFRALLKERE
EELRISDEDDVPETSTEDIVRLYEVVLSELTFNSKPIITELTIIAGEQREYGEGIADAIC
NRILEVPVEQKLPSLYLLDSIVKNIGREYVRYFASRLPEVFCEAYRQVHPNLYPAMRHLF
GTWSAVFPPSVLRKIEAELKLSSPVNHPSSGLTVLKSSESPSPRPTHGIHVNPKYLEARR
QLEHSAMDIQHSRGGSSSLQIYGQKPAIGYDEYDIDHSDVLGNQKLGSPGAAVRTSSVGG
IDRLYPSKTRLTRPASPSRIGPPRSLSPPADGFTTDTSPGRVVERASPSHSGIDSRLVRV
IDGDADGERTEWWKRRSNDIYQQVEISSAYLSNGSDQQSPRALIDAYGNYRGKNTLSEKP
LKVGRLDVNGISIKTDKGWQNTEEEEYVWEDMSPTLADRSRSNDLMLCNPPLDSFNGRAG
LGRSGAASLEPDFRKGNWPSRGHLAKDDCAEDGVSVLGFGHGSMTSKKPLSGPATRNEFT
RIASSHYPQEPWSLPHHFSQSSQQNLDLNARARTGQMSYPAGGMAISAGQKLALQIENFA
DTDGQFQRFSSVMSRMGSSSPDSLNVELVSPMMPMSTLEKHLGQRPHSPPLAQLPWPPVN
VHRSYPLTLPRILPQQKQIKSPFDVMDVNKPILNQIPNKSSMLLGQQVDAFERKAHSSSK
LVQLPNQQVGLISLNQRNQGQAPLRQQQLIQPQDAGENFVPSAAPQVSSHLMNQGHIPQG
HGPVTSSILSIPIAGVPSSSVTIPSIYNSSFHLQGRALPPLPPGPPPASSQMGPMPQNLG
PIRMQAPSGSAFSGLISSLMAQGLISLTTSASVEDSVGVDFNPDLLKVRHESAIKALYAD
LPRQCTTCGVRFKCQEEHSSHMDWHVTKNRISKNHKQKPSRKWFVSTSVWLSGAEALGTD
AVPGFLPTEAVVEKRDDEEMAVPADENQNVCALCGEPFDDFYSDETEEWMYKGAVYLNAP
DGSTVGMDRSQLGPIIHAKCRSESTEASPEDFVLDEGDKEGNQRKKMRS
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagagaggttcgtctcctccagagagaaccctagaaatttagggtttctacaa
gaacgtggtccgggcaccagcagcaatatcaataatagcaaggtcatgaccaatgacctc
cttcagaagcctcctcccccagttcttgatcggtttagggctcttttgaaggagagggaa
gaggagttgaggatctctgacgaagacgatgttccggagacgagtactgaagacattgtt
cgactgtacgaagtcgttttatcggagcttactttcaattcaaagcctatcataaccgag
ctaacgataatcgccggagaacagagggagtacggcgagggaattgcggatgcaatttgc
aaccggattcttgaggtgcctgttgagcaaaaattgccttctttatatcttcttgatagt
attgtgaagaacattggtcgtgaatatgttaggtattttgcttcccgtctccctgaggta
ttttgtgaagcatataggcaagttcaccctaacctgtatccagccatgcggcacctcttt
ggcacctggtcagcggtattcccaccttcagttcttcgcaaaattgaggcagaactaaaa
ttgtcttctcctgtgaaccatccgtcatctggcttgacagttttaaaatcatctgaatct
ccatctcctcgaccaactcatggaatacatgtgaatccaaaatatttggaggcgagacgt
caattagaacattcagccatggatattcaacattcaagagggggttcatcaagtttacag
atatatggacagaaacctgccattgggtatgatgaatatgatattgatcattcagatgtc
ctgggaaaccagaaattaggatcgcctggggctgctgttcgtacatcatctgttggtggg
atagacagactatacccttcaaaaactagacttacaaggcccgcttctccttcaagaatt
gggcctcctaggtctttatcgccaccagctgatgggttcacaactgatacttctccagga
agggttgttgaaagggcttctccatctcattctggaattgattccaggcttgtcagagtg
attgatggtgatgctgatggggagaggactgagtggtggaaacgccggtccaatgacatt
tatcagcaagtagaaatttctagtgcatacctaagtaatggatctgatcagcaaagtcca
agagctctaattgatgcttatggaaattacagagggaaaaacacactgagtgagaagcct
ctgaaggttggacggcttgatgtaaatggcataagcattaaaacagataaaggatggcag
aatactgaagaagaagagtatgtttgggaagatatgagcccaacattagcagaccgtagt
aggagtaatgatctaatgctatgtaatcctcctctagatagcttcaacggaagagctggt
ttaggaagatcaggtgctgcaagcttggaacctgatttcagaaagggcaattggcctagt
cggggtcacctagcaaaggatgactgtgctgaagatggagtttctgtccttggttttgga
catggatccatgactagcaagaaacctctgagtggtcctgcaactcgaaatgaattcact
cggattgcaagttctcactatcctcaggagccttggagtttacctcatcacttctctcag
tcctcccaacaaaacctggacctaaacgcaagagcaagaactggtcagatgtcataccca
gcaggtggaatggctatatcagctggtcagaaactggctcttcagattgaaaattttgca
gatacagatggacaatttcaaagattctctagtgtaatgtcaagaatgggttcttcgagc
ccagattctttgaacgtggagcttgtgtcacctatgatgccaatgtcgacgctggaaaag
catctgggacaaaggcctcattcgcctcccctggcacaacttccttggcctccagttaat
gtgcatagatcttatccgcttactctgccccgtattcttccacaacagaagcaaattaag
agcccatttgacgtaatggatgttaacaagccaattctgaatcaaattccaaataaatct
tctatgttgttagggcagcaagtggatgcttttgaaaggaaagcacatagttcaagcaag
ctggtgcaattgcctaatcagcaggttggattgatttcattgaatcagagaaaccaggga
caagctccactccggcagcagcaattaattcagcctcaggatgctggggaaaattttgtt
ccctctgctgctcctcaggtctcgtctcatttaatgaatcagggacacattccacaaggg
catggccctgttacgagttcaattttgtccattccaatagctggggttccttcctcctct
gtaactatacctagtatatacaatagctccttccatttgcagggtagagccttgcctcct
ttacctcctgggcctcctcctgcctcatcacaaatgggacccatgcctcaaaatttgggc
cctattagaatgcaggcaccatctggaagtgcattttctggtctcattagttctctcatg
gcccagggtttgatttcattgacaacctcggcttcggtagaggattctgttggagttgac
ttcaatccggatcttctcaaggttcggcatgaatctgcaataaaggctttatatgctgat
cttccaagacaatgtacaacatgtggtgtacgtttcaaatgccaagaggaacacagtagt
cacatggattggcatgtgaccaagaatcggatatctaaaaaccataagcagaaaccctct
cgcaagtggtttgtgagtactagtgtgtggctcagtggtgcagaggcattgggaactgat
gcagttcctgggtttttgcctactgaagctgttgtggaaaaaagggatgatgaagaaatg
gctgttcctgctgatgagaatcagaatgtgtgtgcattgtgtggggagccttttgatgac
ttttatagtgacgagaccgaggaatggatgtataaaggggccgtctatttaaatgctcct
gatggatcaacagtaggcatggatagatctcagctgggaccaatcattcatgcaaagtgc
agatcagagtctacggaagcttcccctgaagattttgtactagatgaaggggataaagag
ggtaatcaaagaaaaaagatgcggagttag
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