Telopea speciosissima (New South Wales waratah): 122640598
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Entry
122640598 CDS
T07910
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122640598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tss03021
]
122640598
Transcription machinery [BR:
tss03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
122640598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
WHD_SOWAH
WHD_Rad26_CSB
DZR_2
Ribosomal_S27e
Motif
Other DBs
NCBI-GeneID:
122640598
NCBI-ProteinID:
XP_043689754
LinkDB
All DBs
Position
9:3443593..3455263
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AA seq
540 aa
AA seq
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MSFDLLLKPSCSGCGSTTDLYGSNCKHMTLCLACGKTMAENRGKCVDCGVTVTRLIREYN
VRASSASDKNYFIGRFVSGVPNFSKKKNAEKWSFQKEGLQGRQVTDALREKYKNKPWLLE
DETGQFQYHGQLEGAQSATYYLLMLQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMK
NRRKTADGYQRWMMKAANNGPAAFGEGEKSDDKEGGGATGRGRRKASGEEDEGNVSDKGE
EDEEEEEARKNRLGLSKKGGDDDEEGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVGN
DPEEREDLAPEVPAPPEIKQDEEDEDEASEEEGGLSKSGKELQKLLGRTNGMNESEGEDD
DDDDDMEDDIGLSPVLAPKQKDAPKEEPAEISPSKTGTSGSARGTPSASKSSKSKRKSGG
DDAKVANGAPAKKGRFDNAQESKPSVKDEPLSTPKSSALPKGSASSSKVGPTPSTGPVTE
DEIRAVLLQMAPVTTQDLVANFKARLKSKEDKTAFAEILRRISKIQKTNGPNNYVVLREK
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttgatcttcttttgaagccgtcatgcagcggttgtggttcaacgactgatctt
tatgggagtaattgtaagcacatgactctctgcttggcctgtggaaaaacaatggcggag
aatcgtgggaaatgtgtcgattgtggcgtaacagtgacacgattaattcgggagtataat
gttcgagctagttctgcaagtgataaaaattacttcataggtagatttgtctctggggtt
cccaatttttcaaagaagaaaaatgccgagaaatggtctttccaaaaagaaggacttcaa
ggacgccaagttacagatgctttgcgggagaagtacaagaataaaccttggcttttggag
gatgagactggccaatttcagtatcatggtcagcttgagggtgcacaatctgcaacatat
tatctgctcatgttgcaaggaaaggagttcgttgctattcctgctggttcttggtacaac
tttaacaaagttgctcaatacaaacaacttaccttggaagaagctgaagagaagatgaaa
aataggaggaaaactgcagatggataccaaaggtggatgatgaaagcagcaaacaatgga
cctgctgcctttggtgaaggggaaaaatctgatgacaaggaaggtggtggggctactgga
cgggggcgtaggaaagcatctggtgaggaggatgaaggaaatgtctcggacaagggagag
gaggatgaggaagaagaggaggctaggaaaaatagacttggactaagcaaaaaaggtggt
gatgatgatgaagaaggtcctagaggaggtgatcttgatttggatgatgatgatattgag
aagggtgatgattgggaacatgaagaaatattcactgatgatgatgaggctgtgggtaac
gatcctgaggaaagggaagatttggctcctgaagttcctgctcctccagaaatcaaacag
gatgaagaggatgaggatgaagctagtgaagaggagggaggtctgagcaaatcaggaaag
gagctacagaagctgcttgggcgaaccaatgggatgaatgaatcagaaggtgaagatgat
gacgatgatgatgatatggaagatgacattggcctttcccctgtactggctccaaaacag
aaggatgcaccgaaagaggaaccagctgagatcagcccctcaaaaacaggaacatcaggt
tctgcacgaggaaccccttctgcatcaaagtcatcaaagtcaaaaaggaaatcaggtggg
gatgatgcaaaggttgctaatggagcacctgctaagaaagggagatttgataatgctcag
gaatcaaaaccatctgttaaggatgagccgctgtccactcccaagagtagtgcacttcct
aaaggttcagcatcatcttctaaggttggaccaacaccatcgactggccctgttactgag
gatgaaatcagggctgtattgctgcaaatggcaccagttactacacaggatcttgttgct
aactttaaagcaagactaaaatctaaggaggacaagacagcttttgcagaaatcctgagg
cgaatttctaagatacagaagacgaatgggcccaacaactatgttgtgttgagagagaaa
tga
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