Telopea speciosissima (New South Wales waratah): 122641376
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Entry
122641376 CDS
T07910
Name
(RefSeq) BRCA1-associated RING domain protein 1-like
KO
K10683
BRCA1-associated RING domain protein 1
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122641376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122641376
04121 Ubiquitin system [BR:
tss04121
]
122641376
03036 Chromosome and associated proteins [BR:
tss03036
]
122641376
03400 DNA repair and recombination proteins [BR:
tss03400
]
122641376
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
122641376
Ubiquitin system [BR:
tss04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
122641376
Chromosome and associated proteins [BR:
tss03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
122641376
DNA repair and recombination proteins [BR:
tss03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
122641376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-RING_6
zf-C3HC4_3
zf-HC5HC2H_2
zf-C3HC4_2
zf-RING_10
zf-RING_UBOX
zf-RING_2
zf-RING_5
zf-C3HC4
Prok-RING_4
zf-C3HC4_4
RTT107_BRCT_5
PTCB-BRCT
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
122641376
NCBI-ProteinID:
XP_043690519
LinkDB
All DBs
Position
10:complement(50443178..50454651)
Genome browser
AA seq
737 aa
AA seq
DB search
MADSLSIGRFLFLNPWLLHLQKMCLELKCSVCLNLLNRPLLMPCNHILCSSCIPRTTEFG
SECPVCRSPFVHKDLRPAPHMENIVSIYRSMDEAFGANLLHWVPQSQIDLADVGRALDQF
PATFTTVIDDRSRKEPINAMRMGISGYPSSSTASLHVNELVHLPTHHSEVRVERSRRPDE
SNVPSNGDAVKKLGQSVGEQRKFHGEGCANSLQPQQLRDEKLGASRGSEDDLNNFTQTSY
DSPPPFGDGKDSDDDSNARGSQHSVDKFSAKSMLKESVDGFVKEMGQGPLTQPGEDHGRE
SKRMKLNYDPIDTATENGIHRLPFLDSENVLMSQPKHKNGLSASAVQSSVGPDCSDSKST
VICAFCQSSSLSQCFGPMMHFSNGKEIVADEAAQPNVLHVHKKCIEWAPQVYFADDAVHN
LEKEISRGAKLKCSHCGLKGAALGCYAESCRKSFHVPCAVQIEGCRWDTENFLVLCPTHS
SKKFPNEISKLGKRMRGCHASTNKMNCSQSIKSAGNPEGWVLCGSSLSVIEKNILAKFAK
MIGATVAKVWKPNVTHVIAATDEMGACSRTVKVLMAILHGIWVLKIDWIKDCLEALQPLP
EEPYEVQRDIHGCCNGPKNGRLRMVKAPRLFTGLDFYFFGDFVPSYKECLEDLVLAAGGT
LLKNKGMLLPQDSEQETSSTFIVYNHDAPENRTSVEEYMECRLKKAEDFAAEFGCQVIGH
TWLLESIAACEIQPPTC
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atggcggattcgttgagcattggtcgcttcctttttctcaatccatggttactccacttg
cagaaaatgtgtctagaactcaagtgttccgtatgcttgaacttgctgaatcgaccatta
ttgatgccatgcaatcacatattatgcagttcttgcattccaagaacaacagagttcgga
tccgagtgtcccgtctgtagatcaccttttgttcacaaagatttaaggccggctcctcac
atggaaaatattgttagcatctatcggagtatggatgaagcctttggtgctaatctcttg
cattgggttcctcaaagtcaaattgatctggctgatgtgggaagggcattggatcaattc
ccggctacgtttactactgttattgatgataggtcgaggaaggaacccattaacgccatg
cgaatgggaatctctggctacccatcatcatccacagcatctttgcatgttaatgaacta
gttcatcttcctacacatcattcggaagtcagagttgagagatctagaagacctgatgaa
tccaatgtgccaagtaatggtgatgcagtgaaaaaattagggcaatcggttggggaacag
aggaaatttcatggtgaagggtgtgctaattcattgcagcctcagcagcttagagatgag
aaacttggtgcaagcagaggttcagaagatgatttgaataatttcacacagacatcctat
gacagcccaccaccattcggcgatgggaaggattcagatgatgacagcaatgcccgtggt
agccagcatagtgttgacaaattctcagccaaaagcatgttgaaggagtcagtggatgga
tttgtcaaagagatgggtcaaggaccattaactcaacctggagaagatcatggtagggaa
tcaaagagaatgaagttgaactatgatcctatagatactgccacagaaaatggcattcac
aggttaccatttttggattctgagaatgtgttgatgtcccaacccaaacacaaaaacgga
ttatctgcttcggctgtgcaatcatcagttggtccagactgttcagattcaaagtcaact
gtaatatgtgcattttgccagtcatctagtttgtcacagtgttttggaccaatgatgcat
ttttccaatggaaaggaaatagtggcagatgaggcagctcaacccaatgtcttgcatgta
cacaagaaatgcattgaatgggcgccccaggtgtattttgctgatgatgctgttcataat
ttggagaaagaaatttcaaggggtgcaaagctcaagtgcagccattgtgggctgaagggt
gcagcccttggttgctatgcagaatcctgccgaaagtcttttcatgttccctgtgcagta
caaattgaaggttgtcggtgggatactgaaaattttctagtgctttgtcctactcattca
tcaaaaaaatttccaaatgagatctccaagcttgggaagaggatgagaggttgccatgct
tcaacaaataaaatgaattgtagtcaatccatcaaatctgctggtaatcctgaaggatgg
gttctatgtggatcttctctctctgttatagagaagaatattttggccaagttcgcaaaa
atgattggcgctactgtcgcaaaggtttggaagccaaatgtcacccatgtcattgcagcc
acagatgagatgggtgcctgcagcaggaccgtgaaagtccttatggccatcttgcatgga
atatgggtcttgaaaattgactggataaaagattgcttggaagctttgcaacctttgccc
gaagagccgtatgaagtccaacgtgacattcatggttgttgcaatggccccaaaaatggc
agacttaggatggtgaaggcaccaaggctatttactggcctggacttctacttctttggt
gattttgtgccatcatacaaggaatgcctcgaggatttagtgttggctgctgggggtacc
cttcttaagaacaagggcatgttactcccacaagatagtgaacaggaaacttcctcaacc
ttcattgtttacaaccatgatgccccggaaaatcgtacatcggtggaggagtatatggag
tgtagattaaaaaaagcagaagattttgctgctgaatttggatgtcaggtcattggacat
acttggcttttagaatcaatagcagcttgtgagattcaacctcctacttgctaa
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