Telopea speciosissima (New South Wales waratah): 122641914
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Entry
122641914 CDS
T07910
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122641914
03041 Spliceosome [BR:
tss03041
]
122641914
03036 Chromosome and associated proteins [BR:
tss03036
]
122641914
Enzymes [BR:
tss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122641914
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122641914
mRNA cycle factors
Common to processing body (P body) and stress granule
122641914
Spliceosome [BR:
tss03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122641914
Chromosome and associated proteins [BR:
tss03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122641914
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Fib-H_N
Motif
Other DBs
NCBI-GeneID:
122641914
NCBI-ProteinID:
XP_043691180
LinkDB
All DBs
Position
10:complement(2739263..2748149)
Genome browser
AA seq
629 aa
AA seq
DB search
MRSSWADSVSAAESTAAGSSANNGVGSTSRPAKASYVPPHLRNRPPSSDPSGPAFNGSSV
GNDRPNYDAALGGNRWGGPRSDLGRPGYGGGGRLGGGGGGWNNNRGGWDRGREREVNPFG
DDADVDAEPAFVEQENTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGEALNHNIRRCK
YVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMNGQFSQRPRGARTVYP
LALILSPTRELSCQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRL
VDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPQRGARQTMLFSATFPK
EIQRLAADFLSNYIFLAVGRVGSSTDLIVQRVEFVLESDKRSHLMDLLHAQRANGTHGKQ
SLTLVFVETKKGADSLENWLCINGFPATTIHGDRTQMEREQALRSFKSGATPILVATDVA
ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENNASMAKALADLMQ
ESNQEVPAWLNRYAARTSYGGGGRNRRSGGGRFGGRDFRRDASFNRGGGSADYYGGGNSS
GGYGASPGGGYGGGGGGGGGGGGYTSAWD
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgcgaagttcatgggcggattctgtctctgcagctgagagcacagctgcaggttcatct
gccaataacggggttggtagcacttcacgtcctgcaaaagcttcttatgttcctccacac
ctccgtaaccggccaccgtcttctgatccttctggacctgcattcaatggctcttccgtc
ggtaatgatcgaccaaattatgatgctgctttaggtggaaatcgttggggcggtccaagg
tctgatctgggacggcctggctatggtggtggcggacgacttggtggtggtggtggtggt
tggaacaacaatcgtggtggatgggatcgtggaagggaacgggaggtaaacccttttgga
gatgatgctgacgttgatgcagagccagcatttgttgagcaggagaacactggcattaac
tttgatgcctatgaagatattccggtggagaccagtggggataatgtgccaccacccgtg
aatacttttgcagagattgacctgggtgaagctctaaatcataacatacggaggtgcaaa
tatgtgaagccaacacctgtgcagcgacatgccattccaatttcccttggagggagggat
ttgatggcatgtgcgcagacggggtctggtaagacagctgctttctgcttcccaattatc
agcggaattatgaatggacagttttcccagagacctcgtggagcacgtacggtgtaccct
cttgctcttattctctcacctacaagggagctctcttgccagatacacgaggaagctaga
aaattttcctatcaaactggcgtcagggtggttgttgcttatggaggagcacctattaac
cagcagctgcgggacttggagaggggtgttgatattcttgtggctactcctggacgatta
gtagacttgttggaaagggcaagagtttcactgcagatgatcaggtatttggctcttgat
gaggctgatcggatgttagatatgggttttgaacctcaaattagaaagattgtggaacaa
atggacatgcctcaacgaggtgctagacagacgatgctcttcagtgccacttttccaaaa
gaaatacagagattggccgcagattttctttctaattatatttttctagctgttggaagg
gttggttcaagtactgatttgattgtccaaagagttgaatttgttctcgagtctgacaag
aggagtcacctcatggaccttcttcatgcacagagggctaatggaactcacggcaagcaa
tctctgactttagtttttgtggaaacaaagaagggagctgattcgttggaaaattggtta
tgtataaatggtttccctgcaactactattcatggtgatagaacacaaatggaaagagaa
caagcattgagatcattcaagagtggtgcaaccccaattttggtggcaactgatgtggca
gcacgtggtcttgatattcctcatgttgcacacgtagtcaactttgatcttcccaatgac
attgatgactatgtccatcggataggacggacaggacgtgctggcaagacagggctagcc
actgccttcttcaatgaaaacaatgcctcaatggccaaggcattggcagatcttatgcag
gaatcgaaccaagaagtaccagcttggctcaatcgttatgcggcccgtacttcgtatggt
ggaggtggtaggaatcgccgttctggcggaggtcgttttggtggccgtgatttccggaga
gatgcatcgttcaatagaggtgggggtagtgcagattactatggtggaggcaacagtagc
ggcggatatggggcttcccctggaggtggttatgggggtgggggtgggggtgggggtggg
ggtggtggatacactagtgcatgggactag
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