Telopea speciosissima (New South Wales waratah): 122642031
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Entry
122642031 CDS
T07910
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122642031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122642031
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122642031
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122642031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
122642031
NCBI-ProteinID:
XP_043691352
LinkDB
All DBs
Position
10:728099..749695
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AA seq
912 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALLDARKQIEREMERFKVCEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELETQVDHFEAEIEGLSVKKGKTRPPRLTHLETSIVRHKA
HIMKLELILRLLDNDELSPEQVNDVRDFLEDYVERNQEDFEEFSDVDELYNSLPLDNLES
LEDLVTIVPPGLVKGVSAAGAVLGLKTSLAVSTTQVSAPLASTTQQGNSIQDQVEETASQ
DSNSDVVPRTPPSKSSVVGSVSSTPAGNHSAAVSSNISAPVSSNISARTLAVGSTASAIL
SGAGSVRGVLDNSVSAVPPSPINLSGSVKEDENASFPGRRSSPSLAEIGLGRGIGRGSVP
GVMSSQPSNSVPLSPGNTIPSNGALGAVPTASEIAKRNILGADERIGSSGIVQPLVSPLS
NRILLPQVSKAEGTGSSDSNNVSDSTVIGGRVFSPSVVPGVQWRPGSSFQNQNEVGQFRG
RTEIAPDQREKFLQRFNQVQQQSQLNVSHLAAGNLKQFSAQPQSSLLQQFNSQNSTLQSQ
VGMGLGVQAPGLNVVTSNSLQQSNSIHQQSTQHALNSPAPKDSDVGHVKNEDQQQQQSSS
DDASVEPVTSSGLNKNLLNEDDMKTSYSVDAAAGGSGSLIEPAQMPRDIDLSPGQPIQSN
QPSVSLGVIGRRSVSDLGAIGDNLSGSTANSGGMHDHLYNLQMLEAAYYKLPQPKDSERP
KSYIPRHPAVTPLSYPQVQAPIVNNPAFWERLGIDTLGTDTLFFAFYYQQNTYQQYLAAR
ELKKQSWRYHRKYNTWFQRHEEPKVTTDEYEQGTYVYFDFHIANDDLQHGWCQRIKTEFT
FEYSYLEDELGV
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgggagctagccgaaagcttcagggagagatcgatcgggtcctcaagaaggtccaagaa
ggcgttgatgtcttcgacagcatctggaacaaggtttacgatactgacaatgcgaaccaa
aaggagaaattcgaggctgatttgaagaaagagatcaagaagcttcagagataccgagac
cagatcaagacatggatacagtcgagtgagatcaaagacaagaaggttagtgcctcttat
gagcaggctctgctggatgctcgcaagcaaattgaacgtgaaatggaaagatttaaggtc
tgtgaaaaagagactaagacgaaagccttcagtaaagaagggttgggtcagcaacccaaa
actgatcccaaagagaaagctaaatcagagacaagggattggctgaacaatgtggttggg
gagctggagactcaagttgatcactttgaagcagagattgaggggctctctgttaagaaa
ggaaagacaaggccaccccgattgacacatttggagacgtctattgttcggcataaagct
catataatgaagttggaattgatcctgaggctgctggataatgatgaattgagtcccgag
caagttaatgacgtcagagatttcttagaagactatgttgaacgcaatcaggaggatttt
gaagaatttagtgatgttgatgagctctacaactctttaccattagataatttggagtcc
cttgaagatttggttacaattgttcctcctggacttgttaagggtgttagtgctgctggc
gcagttttaggattgaagacttctttagcagtttcaacaactcaagtatcggcaccatta
gcatctactactcaacagggtaactcaattcaggatcaagttgaagaaacagcttcccag
gacagtaattctgatgttgtcccgagaactcccccttctaaaagtagtgttgtgggttct
gtttcatcaacacctgcagggaatcattcagctgctgttagcagcaacatttcagcacct
gttagcagcaatatttcagcacgtactttggctgtaggatcaactgcttcagcaatactt
tcgggtgctggttctgttcgaggcgtcctggataactcagtttctgctgttcctccatca
ccaataaatctgtctggctcggtgaaggaagatgagaatgcaagctttccaggccgaaga
tcctcaccatctcttgctgagattggattgggaaggggtattggtagaggttctgtgcct
ggtgttatgtccagccaaccatcaaatagtgtacccttaagtcctggaaatacaatccct
agcaatggagcccttggtgcagttcctaccgcctctgaaattgcaaagagaaatatttta
ggggctgatgagagaattggaagtagtggtattgtgcaaccgctggtttcccccttaagt
aaccgaattcttttgccacaggtctctaaggctgaaggaactggttcatcagattctaat
aatgttagtgactctacagttataggtgggagagttttctccccctcggtagttcccggg
gtacaatggagacctggaagctcatttcagaatcagaatgaagtgggtcaatttcgtgga
agaactgaaattgcacctgatcagagagagaagtttttgcagcggttcaaccaggtccag
cagcaaagtcaacttaatgtctctcatcttgctgcaggaaatcttaagcagttctctgcc
caaccacaaagctcactcctacagcagttcaattctcaaaactcaaccttacagtctcaa
gttggaatgggccttggagttcaggctccgggtctcaatgttgttacatctaactctcta
cagcagtcaaattctatccatcagcaatctactcagcatgctcttaactcgcctgcacca
aaagattcggatgttggccatgtgaaaaatgaggaccagcagcaacagcagagttcatct
gatgatgcgagtgttgaacctgttaccagttctggactcaacaagaatctcttgaacgag
gatgatatgaagacttcatattcggttgatgcagctgctggaggttctggctctttgatt
gagcctgcccaaatgcctagagatattgatctctcccctggtcaacctatacaatccaat
caaccttcagtcagcttaggtgtcattggtcgaagaagtgtttctgaccttggtgccatc
ggtgataacctcagtggatcaactgcaaattctggggggatgcatgatcatttgtacaat
ttgcagatgcttgaggctgcttactacaagcttccccaacccaaagactcagaacgtcca
aagagctatattcctagacaccctgcagtgaccccgttgagctatcctcaggtgcaggca
cccattgtcaataatcctgccttctgggagcgactgggtattgacacattgggcactgat
accctgttctttgcattttactatcaacagaatacttatcagcaatacttggctgcaaga
gagttgaaaaagcaatcatggagataccacaggaaatataacacatggttccaacggcac
gaggaaccaaaagttaccactgatgaatatgaacaggggacctatgtatactttgacttt
cacattgccaatgatgacttacaacatggatggtgccagaggatcaagactgagttcact
ttcgagtacagttaccttgaagatgaacttggtgtgtag
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