Telopea speciosissima (New South Wales waratah): 122642089
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Entry
122642089 CDS
T07910
Name
(RefSeq) probable RNA helicase SDE3 isoform X1
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122642089
03036 Chromosome and associated proteins [BR:
tss03036
]
122642089
Enzymes [BR:
tss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
122642089
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122642089
Chromosome and associated proteins [BR:
tss03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
122642089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
AAA_16
AAA_22
NAT10_TcmA_helicase
nSTAND_NTPase5
RuvB_N
AAA
DEAD
ATPase_2
Mov-10_helical
SLFN-g3_helicase
AAA_2
Med6
TRAPPC13_N
ABC_tran
Motif
Other DBs
NCBI-GeneID:
122642089
NCBI-ProteinID:
XP_043691439
LinkDB
All DBs
Position
10:55057958..55065955
Genome browser
AA seq
886 aa
AA seq
DB search
MGSIRDDWDEECSYIGDKGEIGFIDYEEDKSVCSYNPLDEGPIVISVPFPFTRGKPQSIF
VGETTADSITIHNTTSDPVELWAVKIYCSNPADSYTLSLMEPPSANSDVETIRGFLESFS
LEDRVLQPGQTLKIWLSCKPKDIGLHTSVVHFDVGDDRIERVVFLLVEDKVAQSLSANKP
YSRAPRKKQFAVNEYVAGSRPARAASTQSFKHRLPNYNIPKDLRGMVENKQVPYVITEGL
TRENYAEYFSALLVMEEIHMEEKMRGHDMEGVTMKKRGSRFLALEVPGLAERRPSLVCGD
HVFVKLAASVLDDSAPPYQGFIHRVEADEVLLSFAHDFHQRHCDSNTYNVRFSYNRMNYR
RQYHAVNAAQNLDNVLLFPSQLSKMRVIKTNPMVPLNQNLNEQQMVSVEMIRGCKGAPPY
VIHGPPGTGKTMTLVEAIMQIYTNRKKGRILVCAASNYAADHILERLTSKDIIVVREDEI
FRLNAQNRSFEDLHSDLIRFCFFEDHVFKCPPLRALIHYRIIVSTYMSASYLSAEGINRG
HFSHIFLDEAGQSSEPETMVPISNLCRRETVVVLAGDPKQLGPIVYNRDAETYGLGKSYL
ERLFECEFYHGEDGNYVTKLVRNYRCHPSILELPSRLFYNGELIACKEETNASVCSWVDL
LPNKEFPVLFIGIQGCDEREGNNPSWFNRIEASKVVEIIRKLRRGEVNESDVGIITPYRQ
QVLKLKKALENLDMQDVKVGSVEQFQGQEREFIIVSTVRSTVKHNEFDRAHCLGFLSNPR
RFNVAITRARSLLIIVGNPHIICKDPYWAKILWHCSDNNSYQGCPLPERQELELEQEQEQ
EHPEEYWAGEDNPQPSDSAAWGDESFQVEETPQPVTDEAEWSDGWK
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgggtagcattagggacgattgggatgaggaatgctcttacattggagacaaaggagag
attggatttattgattatgaggaagataaatcagtatgcagttacaatccgcttgatgaa
ggcccaattgttatttctgtcccattcccttttacccgtgggaagcctcaatccatattt
gtaggggaaacaactgcagattctatcacgatacataataccacctccgacccagttgaa
ctttgggcagtcaagatttactgttcaaacccagcagactcttacacactgtcgttgatg
gaacctccgtcagcgaattcagatgtggagaccattcgaggcttcttagaatcattttcc
ttagaagatagagtccttcagccaggccagactctcaaaatatggttatcatgtaaacca
aaggacattggtttgcacacttcagtggtgcattttgatgttggtgatgacaggatagag
cgggttgtttttcttttggtggaagataaggtcgctcaatctctgtccgcaaacaagcca
tattcaagagccccccgaaagaaacagtttgcagttaatgagtatgtggcaggttctcgt
cctgcgagggcagcatcaacacagagtttcaagcataggcttcctaattataatatcccg
aaagaccttaggggtatggtggagaataaacaagtcccttacgttatcacagaaggtcta
acgagggagaattatgctgagtacttcagtgctttattggttatggaagaaatacatatg
gaggaaaaaatgagaggccatgacatggaaggcgtcaccatgaagaagagggggagtcga
ttcttggcccttgaggtacctggactggctgaaagaaggccttcattggtctgtggtgac
catgtttttgtcaagcttgctgcttcagttctagatgatagtgccccaccatatcagggg
ttcattcatcgtgttgaggctgacgaagtgttgttgagctttgctcatgatttccaccag
cggcactgtgactctaacacatataatgttagattcagttacaataggatgaattatagg
aggcaatatcatgctgttaatgcagcacaaaatctagacaatgttctcctctttccatcg
cagttatccaaaatgagggtgatcaaaacaaacccaatggttcccttaaatcagaacctc
aatgaacagcaaatggtttcggttgaaatgatacggggttgcaaaggggcgccaccttat
gtgattcatggaccaccaggtacaggtaaaaccatgacattggtggaagcaatcatgcag
atttacacaaatagaaagaaaggcagaattcttgtttgtgctgcctctaattatgcagca
gatcacatattagagaggctcacctctaaggatattattgtggttcgggaggatgagata
ttcaggttaaatgctcaaaaccgttcttttgaggaccttcactctgacctcatccgtttt
tgcttctttgaggatcacgtcttcaagtgtcctccattgagggctttgatacactacagg
atcattgtatccacttatatgagtgcatcttacctaagtgcagaaggcatcaatcggggc
cacttctctcatattttcttggatgaggctggccaatcttctgagccagagacaatggtc
cctatttcgaatctttgccgaagggaaactgttgttgttttggctggagatccaaagcaa
ttaggccccattgtctacaacagagatgcagaaacatacggtttaggaaaatcataccta
gaaaggctatttgaatgtgaattttaccacggtgaggatggaaattatgtcacaaaactg
gtgaggaattatcgatgccatccatcaatcctggaattaccttcaaggctcttctataat
ggggaattgattgcctgtaaagaagagacaaatgcctctgtgtgttcatgggtggacctc
cttcctaacaaagagtttccagttttgttcattggaattcaaggatgtgatgaaagggaa
ggcaataatccatcgtggtttaatcgaattgaagctagcaaggttgtagagatcatcagg
aagctgagaaggggcgaagtgaacgaatcagatgttgggataataactccttaccgccag
caagtacttaaattaaagaaagcccttgaaaatctggatatgcaggatgtaaaggttggg
agtgtggaacaatttcagggacaagaaagggaattcataattgtctctactgtcagatct
actgtcaagcacaatgaatttgatagagcacattgtttgggatttcttagcaatcccagg
agatttaatgttgctattactcgtgcgagatctttgctcataattgttggaaacccgcat
attatctgcaaggatccatattgggctaagattttatggcattgctccgacaacaactct
tatcagggttgtcctctccctgaaaggcaagagctagagctagagcaagagcaagaacag
gagcatccagaggaatattgggctggcgaagacaatccacagccctctgacagtgcagca
tggggtgatgaatccttccaggtagaagagacacctcagccagtgactgatgaagctgaa
tggtcagatggctggaagtaa
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