Telopea speciosissima (New South Wales waratah): 122642163
Help
Entry
122642163 CDS
T07910
Name
(RefSeq) splicing factor 3B subunit 3 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122642163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tss03021
]
122642163
03041 Spliceosome [BR:
tss03041
]
122642163
03036 Chromosome and associated proteins [BR:
tss03036
]
122642163
Transcription machinery [BR:
tss03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
122642163
Spliceosome [BR:
tss03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
122642163
Complex B
122642163
Complex C
U2 SnRNP specific factors
122642163
Chromosome and associated proteins [BR:
tss03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
122642163
TFTC complex
122642163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
122642163
NCBI-ProteinID:
XP_043691522
LinkDB
All DBs
Position
10:complement(62020325..62099739)
Genome browser
AA seq
1395 aa
AA seq
DB search
MATAEEDSSSVQYRPDSNGDHYVAKCVLKGTAVLQAVHGHLRSSSSFDVVFGKETSIELV
VIGEDGVVQSICEQAVFGTIKDLAVVRWNEKFRAPIPQTQGRDLLVVLSESGKLSFLTFC
NEMHRFFPVAHVQLSNPGNQRNQLGRKLAVDSNGCFVAVSAYEDRLALFSVSISARSNIV
DKKIFYPPEIDGDANSAMDIQRTSICGVIWSMCFISKDCSQLNQDVYNPIVAVVLNRRGG
ILNELLLLEWNMREDSLYVISQYTEAGPLSLDIVEVPHAYGFAFLFRDGDALLMDLRDPH
NPSCVYKTTLSLLSTPVEEQTSVQEPCKGLDVDDEGIFNVAACALLELRDSKMEIIKGDD
PMSIDSESSKVNSTSKCVNAWSWEPGNSTRSRLMFCLNTGELFMIEVCSDSDGIRVNLSD
CFYRGPTCKALLWVEGGLVAALVEMGDGMVLKLENGKLVYSSPIQNIAPILDMSVVDYHD
ENQDQIFACCGKAPEGSLRVIRSGISVEKLLRTAPIYQGVTGTWTVRMKLTDFYHSFLVL
SFVEETRVLSVGVSFIDVTEAVGFQPDVCTLACGLVGDGLLVQIHGNAVRLCLPTVAAHS
EGILLSAAISTSWSPDKASISSGAVGNGLIIVATSNPCFLYILGARSLSVYHYEIYEMQH
VKLQNELSCISIPQKRFECKQLTLNMADNSCEVATPTGVEIGNSFVIGTHRPSVEILSFV
PEEGIRILARGVISLTNTLGTAISGCVPQDVRLVLVDRLYILSGLRNGMLLRMEWPATSM
AFPSELPNQSPFIPFCFGNADAVPSSMATPALVGQRYCASNECQRAEDNVPVDLQLIAIR
RIGITPVFLVPLSDSLDADIIALSDRPWLLQTARRSLSYTSISFQPATHVTPVCSMECPK
GILFVAENSLHLVEMVHCKRLNVQKFYLGGTPRKVLYHSDSRLLLVMRTDLHTESSSSDI
CCVDPLSGSVLSTYKFEPGETGKSMQLVKVANEQVLVVGTSLSSGRAIMPSGEAESTKGR
LLVLCLEHTQNSASSSWIFCSKTSSSSQLTSPFREIVGYATEQLSSSSLCSSPDDNSCEG
VKLEESEVWQWRVAYQTTLPGMVLSVCSYLDRYFLASAGNIFYVYCFMHENPQRVKRFAL
GRTRFAITCLTTQFTRIAVGDCRDGILFYSYQEDLRKLEQLYCDPMLRLVADCTLIDMDT
AFVSDRKGSIAVLSRTSHLEDNASPESNLTLSCSYYIGEIAMSITKGSFSYKLPADDVLK
GYDSTNTVMDSSHNTIVASTLLGSVMIFIPITREEHELLEAVQARLVVHPLTSPILGNDH
SEFRGRESLANVPKMLDGDMLAQFLELTSMQQEAVLASSFGLMDVGSSSSKPPSQSPIPV
NKVVQLLERLHYALN
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccgcagaggaggactcgtcttctgttcagtaccgaccagattcgaatggcgac
cattatgtagcgaaatgcgtgcttaaggggactgcagttcttcaggccgttcatggacat
ctccgctcttcttcgtcattcgacgtggtctttgggaaggaaacatctatagagttggta
gtaattggtgaggatggggttgtacagtctatttgtgaacaggctgtgtttggaacaatt
aaggatcttgcagttgtgcgctggaatgaaaagttccgtgcaccaattccacagacacag
ggaagagatcttctagtggttctttctgagtctggaaagctctcttttcttacattttgc
aatgaaatgcacaggttcttcccagttgcacatgttcaactttccaatcctggaaaccag
agaaatcaattaggaagaaagttagctgttgattccaatggctgtttcgttgctgttagt
gcatatgaagaccgattggctttgttttctgtttctatatcagctcgcagcaatatcgtt
gataagaaaatattctatccacctgaaattgatggggacgcaaacagtgcaatggacatc
cagagaaccagtatctgtggtgttatttggagcatgtgcttcatatcaaaagattgcagc
caacttaatcaggatgtatacaatcctatagtagcagttgttttgaacaggaggggagga
atcttgaatgagctgttgttattggaatggaacatgagggaggattctctttatgttatc
tctcagtataccgaagccgggcctctttcacttgacatcgttgaagttcctcatgcttat
gggtttgcatttctgtttagggatggtgatgctttgttgatggatcttagagatcctcac
aatccctcctgtgtttacaaaacaacattaagtcttttatctacaccagttgaggaacaa
acttctgttcaagagccatgtaaaggacttgatgttgatgatgaaggtatttttaatgtt
gctgcctgtgcattactggagctcagagattcaaaaatggaaatcattaaaggtgatgac
cctatgagtatagatagtgaaagcagtaaagtgaattctacttccaaatgtgtgaatgct
tggagttgggaaccaggaaactcaacacgttcaaggctgatgttttgtctgaatacagga
gaattatttatgatagaggtttgttctgattctgatggtattagagttaacttatctgat
tgtttttaccgaggtccaacttgtaaggcacttttatgggttgaaggtggattagttgct
gcacttgtagagatgggggatgggatggtcctgaagttggaaaatggaaagctagtttat
agtagccctattcaaaacattgctccaatattggacatgtcggttgtggattaccatgat
gaaaatcaagaccagatttttgcctgctgtggaaaggctcccgaaggatcactaagggtt
attcgtagtggtatcagtgtagaaaagcttttgagaactgctccaatttaccaaggcgtt
actggtacatggactgtgaggatgaaattaactgatttttatcattcctttttagtgcta
tcatttgttgaagagactagggtactatcagttggtgtgagctttattgatgtgaccgaa
gcagttggtttccagcctgatgtctgcactttagcatgcggtcttgtgggtgatggcttg
ctggtccaaatccatggaaatgcggtgagactttgtttgccaacagttgctgctcattct
gaaggcatccttttatctgctgcgatttctacatcttggtcccctgataaagcaagtatc
agttcaggggcagttggaaatggtttgataattgtggctacttctaatccctgcttctta
tatattcttggggctagatcattatcagtgtatcattatgaaatatatgaaatgcaacat
gtgaagctgcagaatgagttatcgtgcatatctataccacaaaaaagatttgaatgcaaa
cagctaactttaaatatggctgataatagttgtgaggttgccacgccaactggggttgag
attggtaattcttttgttattggtacacatagaccttcagttgaaattctatcgtttgta
cctgaagaaggcataagaatccttgctagaggggtcatttccctgaccaatacactagga
actgctatcagtgggtgtgtccctcaagatgtgaggcttgtgttggttgatcgactttat
atcctttcgggtttgagaaatggaatgcttcttaggatggagtggcctgctacatccatg
gcatttccatcagaattacctaaccaaagccctttcattcctttctgcttcggaaatgcg
gatgctgttccttcaagtatggcaactccagctttagttgggcaacgatattgtgccagt
aacgagtgtcaaagagcagaggataatgtccctgtggatctacaattgattgccatccgt
cggataggcattactcctgttttcctggttcctttgagtgattctcttgatgcagatata
attgctcttagtgacaggccctggttattgcaaactgcaaggcgcagtctttcatatact
tctatctcattccaacctgcaacacatgtcacccctgtttgttctatggagtgccctaag
ggaattctatttgttgcggagaacagcctacatttggtggagatggttcactgtaagaga
cttaatgttcagaagttttatcttggtggcacacctcggaaggtcttatatcacagtgac
agcaggttattacttgttatgaggacagacctacacactgagtcaagttcatctgacatt
tgctgtgtagatcctctcagtggttcagttctttcaacatacaagtttgaacctggagaa
actggaaaatctatgcagttagtgaaggttgcaaatgaacaagtattggtagttgggacc
agtctgtcttctggaagagctataatgcccagtggggaagctgaaagtaccaaggggcgt
ctacttgtcctctgccttgagcatacacagaattctgctagcagttcatggattttttgt
tccaagacgagttcatcttctcaactaacttctccatttcgtgaaatagttgggtatgcc
actgaacaactttcaagcagtagcctttgcagcagccctgatgataatagctgtgaggga
gttaaacttgaagaatctgaagtatggcagtggcgggtagcttaccaaaccacattgcct
ggaatggtactttctgtatgttcatatcttgatcgttacttcttggcgtctgctggtaat
attttttatgtatattgctttatgcatgagaatcctcagcgggtgaaaaggtttgctttg
gggaggacacgctttgcaataacatgtttaaccacccaatttactaggattgcagttggt
gattgccgtgacggaatccttttctattcctatcaagaggatctcagaaaactagagcag
ctctactgtgatccaatgctgaggttagttgccgactgtactctaatagacatggacact
gcttttgtctcagatcgtaagggtagcattgctgtcctgtcacggacaagccatttagaa
gataacgcaagcccagaatccaacttaactctaagttgttcatattacataggggagata
gccatgagcatcacgaagggctcattttcgtacaaacttccagcagatgatgttctgaag
ggctatgatagtactaacacagtcatggattcgtcccacaacactattgtggctagtaca
ctgttagggagtgtaatgatcttcattcctattacaagggaagaacatgagctattggaa
gctgtacaagctagacttgttgttcacccactgacttctcctatacttggaaatgaccat
agtgagttccggggccgtgaatcactggctaatgtacccaagatgcttgatggggacatg
ctggcccagttcttggagcttacaagtatgcaacaagaagctgtcctggcatcatcattt
ggcttgatggatgtgggatcgtcaagttcaaagccaccctctcagtcacctatccctgtc
aataaggttgtacagttgcttgaacgacttcattatgcccttaactaa
DBGET
integrated database retrieval system
