Telopea speciosissima (New South Wales waratah): 122642374
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Entry
122642374 CDS
T07910
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1 isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122642374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122642374
Enzymes [BR:
tss01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122642374
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122642374
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122642374
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
ANCHR-like_BBOX
Motif
Other DBs
NCBI-GeneID:
122642374
NCBI-ProteinID:
XP_043691758
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Position
10:2625897..2650434
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AA seq
602 aa
AA seq
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MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNSITTDDVPESSPLDGFYLRYKWYRIQSDR
KIAVCSIHPSEQATLQCLGCVKAKIPVAKSYHCSPRCFSDAWQHHRALHDRAASAENENG
TEEEELFGRFNSSGSGVINTSLSSSTSSIGHNSSLNNGSAPLYPTAVTERPSGEIWFEVG
RSKTYTPTADDIGHVLKFECVGVDAESKLPVGHVNTILTSRVIPAPSPSPRRLIPVSGVD
VMGHLDSNGRTVSLESFTVLSYNILSDAYASSELYSYCPSWALSWPYRRQNLLREIVGYR
ADIICLQEVQSDHFEGFFTPELDKHGYQALYKKRTTEVYGGSAYAIDGCAIFFRRDRFTH
VKKYEVEFNKAAQSLTDAVIPSTQKKVALNRLLKDNVALIAVLEAKFITDRRQLLCVANT
HLNVHQDLKDVKLWQVHTLLKGLEKIANSAEIPMLVCGDFNSVPGSAPHALLAMGKVEPM
HRDLEVDPLGIFHSGRKLTHELPLVSAYSSFARLGVGLGFEQQRRRMDPTTNEPLFTHCT
RDFIGTLDYIFYTADSLTVEALLELLDEETVRKDTALPSPEWSSDHIALLAEFRCKPPRT
RR
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcgtgctgcgggtgcaccttccatccgacattccgatcgtaggatgtgagctt
acgccgtatgtgctgttgcggcgacctgataactccattactaccgatgatgttcctgaa
tcatccccactcgatggcttctacttgaggtacaagtggtatcgcatacaaagtgacaga
aaaattgctgtgtgtagtatacatccatctgaacaggctaccttgcagtgcttaggttgt
gttaaggcaaagatacctgttgcaaaaagttatcactgctcacctaggtgcttttcagat
gcatggcaacatcatcgtgctcttcatgatcgtgcggctagtgctgaaaatgaaaatgga
actgaggaggaagagttatttgggcgcttcaatagctcgggatctggtgtaatcaataca
agcttatctagttcaacatcaagtatagggcataattctagcttgaacaatggttctgca
cctttatatccaacagctgttacagaaaggcccagtggtgaaatatggtttgaagttgga
cgttccaaaacatatactccgactgctgatgatattggccatgttcttaagtttgaatgc
gtaggtgtagatgcagagtctaaattacctgtgggacatgttaacactatattgacttcc
cgcgtaatcccagctccctcccctagtccccgtcgtttgattccagtcagtggagttgat
gttatggggcatttggattcaaatggccgtactgtgtccttggaatcctttaccgtgcta
tcgtacaatattctctctgatgcatatgcttcaagtgaactatacagttactgcccttct
tgggcactttcttggccctatcggagacagaatttgttgcgtgaaattgttggctaccgt
gcagatatcatttgtcttcaagaggttcaaagtgatcattttgaaggatttttcactcct
gagctggataaacatggttatcaagctctttacaagaagaggacaactgaggtttacggt
ggaagtgcctatgcaattgatggttgcgccatatttttccgccgagacagatttactcat
gtcaaaaaatatgaggtggaatttaataaggctgcgcaatctttgactgatgcagtaata
ccaagtactcagaaaaaagttgctttaaatagattgcttaaggataatgttgcactaata
gcggttctggaagcaaagtttattactgacaggcgacagcttctttgtgtggcaaataca
catttaaatgttcaccaagatctcaaagatgttaagctttggcaggtccatactctatta
aaaggactggagaagatcgcaaacagcgcagagatcccaatgttggtttgtggagatttt
aattcagttcctggaagtgctcctcatgcactgcttgcaatgggaaaggttgaaccaatg
catcgagatttagaagtggatccccttggaattttccactctggcaggaagttaacgcat
gagctacctctggtcagtgcttactcatcatttgcaagactgggtgttggtcttggtttt
gagcaacaacgaaggagaatggaccccacaacaaatgaacctttatttacacactgcact
agagattttataggcactcttgattacatattttatacggcggactctttaactgttgaa
gctttattggagcttttggatgaggagaccgtacggaaagatacagcgcttccttctcca
gagtggtcttctgatcatatagcacttttagctgaattccgctgtaagccacctagaaca
agacgttga
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