Telopea speciosissima (New South Wales waratah): 122643377
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Entry
122643377 CDS
T07910
Name
(RefSeq) exosome complex exonuclease RRP46 homolog isoform X1
KO
K12590
exosome complex component RRP46
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122643377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122643377
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
122643377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF3864
Motif
Other DBs
NCBI-GeneID:
122643377
NCBI-ProteinID:
XP_043692938
LinkDB
All DBs
Position
1:complement(17943946..17960380)
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AA seq
244 aa
AA seq
DB search
MEIDRPDSRTRNQLRPLACSRNILNRAHGSARWSQGDTIVLAAVYGPKTGTRKNENPEKA
SIEVIWKPRTGQVGKAEKEYEMILKRTLQSICVLTINQNTTTTVILQVVNDDGSLLPCAI
NAACAALVDAGIPVKHLAVAICCGMAGSGSVILDPTKLEELQKMEAFTYLVFPNSVHSVL
PEGSLHVDGEPVEHGIITSVTHGVISVDDYLYCLERGHAASAKISDFLRRSLQSHAPSDP
SKAA
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
atggagattgataggcctgacagtcgcacaaggaatcagttgagaccacttgcctgttct
cgcaatattcttaaccgagctcatggttcggctcgttggtctcaaggtgatacaattgtt
ctggctgctgtttatgggccaaaaacaggaacaaggaagaatgaaaaccctgagaaggct
tccattgaggtaatctggaagcccagaactgggcaggtgggcaaagcagagaaggagtat
gagatgatactgaaaagaacgttacaaagtatctgtgttttgaccattaatcaaaacacc
acaaccactgtcatacttcaggttgtcaatgatgatggttcacttctcccatgtgccata
aatgcggcctgcgctgcccttgttgatgctggaattcctgtaaagcatcttgctgttgcc
atttgttgtggtatggcaggaagtggatctgttattctggatcccaccaagctagaagag
ctgcagaaaatggaggctttcacctatttggtatttcccaattcagttcattcggtgctt
ccagaaggatcattacacgttgatggggaaccagtggaacatggaatcattacctctgtt
acccatggtgtaatttctgtggatgattatctttactgcttagaacgaggtcatgctgct
agtgcaaagatctctgatttccttaggagaagcttgcaatcacatgccccaagtgaccca
tcaaaggctgcatag
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