Telopea speciosissima (New South Wales waratah): 122645185
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Entry
122645185 CDS
T07910
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122645185
03036 Chromosome and associated proteins [BR:
tss03036
]
122645185
Enzymes [BR:
tss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
122645185
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122645185
Chromosome and associated proteins [BR:
tss03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
122645185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MOV-10_beta-barrel
Motif
Other DBs
NCBI-GeneID:
122645185
NCBI-ProteinID:
XP_043694452
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All DBs
Position
11:complement(44487540..44492828)
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AA seq
631 aa
AA seq
DB search
MSWFLGILKRIFFGEENETSQRRNPPYSDNGINSVNLGVSYSGVADSSKPSRVPSSFTPI
TTSQSSIRPKSSVKSEISYPDVIKSSELPRAPGSFTPTKPPSSIKQYQSSSESSASVSKL
PTSLSNPSSSLLDPQNSWSSELPRAPGSFTPTKPPSSIKQYQPSSESSASVSKLPTSLSN
PSSSLLDPQNSSKKTKYVVVDKDIISIYVIPDSIKDLIKKDIVPEVLTRPLSPSTYRAYF
AALLYAEDFYVEKWSNFCLSNVNLELHKASIYKKSNKSQNLNESDEHDDKMLVAFRTDLI
PERLPFLLSRDFIFVRPSGKNVEPFQGILYRVVKSTLVLAEFGDDFYSQHAANHKYDISF
SFNRVCLKRCHQAITAAMSSSFQSFLFPGQIDRINNTALSSIFSSHRNLGPDQTSATTLI
SRLTGPLPFLIEGPLCFSADRLSKTGLVIREAVLKIYRTSPHCRILINAPTNNTCDLLLK
SLTVEIPESEMFRANAAFRELDDVPDDILPSCEYKGECFTFPSLLELSNFKVILSTFVSS
FRVHNEGIQPGHFSHIFLLDASSATEPETMVTLANLVDENTSVVVTGALGNSSGWVRSDI
ARRNGLKKSYFQRLLESEPYNKLNSMFVMHL
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgtcttggtttcttggtattttgaaacgcattttttttggggaagaaaatgaaacgtca
cagagaagaaaccctccttactctgataatggcataaattcagtaaatctgggagtttct
tattcgggtgttgcagattcctctaaaccttcaagggtgccaagtagttttactccaatt
acaacctctcagtcgtcaattcgtcccaaaagttctgtaaaatctgaaatttcttatccg
gatgtgataaaatcctctgaacttcctagggcacccggtagttttactccaacaaaacct
ccatcttccattaagcagtaccaatcttcctctgagtcatctgcatcagtttctaagctg
cccacttctttatcaaatccatcttcttctctgttggatccccaaaattcttggtcctct
gaacttcctagggcaccaggtagttttactccaacaaaacctccatcttccattaagcag
taccaaccttcctctgagtcatctgcatcagtttctaagctgcccacttctttatcaaat
ccatcttcttctctgttggatccccaaaattcttccaagaaaacaaaatatgttgtggtt
gacaaggatattatttctatttatgtcattcctgatagcataaaagatttgataaaaaag
gacattgtacctgaagttcttacgaggcccctgtccccatcgacttacagagcctacttt
gctgctttgctctatgcagaggacttctatgttgagaagtggagcaatttctgtttatct
aatgtcaacttggaattgcacaaagcgtccatctataagaaatcaaacaagagccaaaat
ttgaatgaaagtgatgaacatgatgacaaaatgctggtagcttttcggactgatttgatt
cctgagaggctgcctttccttttatcaagagactttatcttcgtacggccttcgggcaag
aatgttgagccattccaggggattctttaccgagtggtgaaaagcacacttgttttggct
gaatttggagatgatttttattctcaacatgcagcaaatcacaaatatgatattagcttc
tcattcaatagagtctgcttaaagaggtgtcatcaagcaattacagctgcaatgagctct
tcattccagagcttcctattccctggtcagatagatagaatcaacaacactgcattgtct
tccattttctcttctcatcgaaatcttggtcctgatcaaacctcggctacaacactgata
tcaaggctcacaggtccactaccttttctcattgaggggccactctgtttttctgcagat
cgattatcgaaaactggtttagtcattcgggaagcagtacttaagatatacagaacctct
ccacactgtcgaatactaataaatgcaccaacaaacaacacatgtgacctgttgctaaaa
agcttgacagtggagattccagaatcagaaatgtttagagcaaatgctgcctttcgagag
cttgatgatgtacccgatgacatccttccttcatgtgaatacaaaggggaatgcttcact
tttccttcacttctggagctttcaaactttaaggtgatcctgtcaacttttgtaagtagc
tttcgggttcacaatgaaggcatacaacctggtcatttcagtcatatttttctattagat
gcttcttcagctactgaaccagagactatggtgactctggctaatcttgttgatgagaat
acatctgttgtagtcacaggtgctcttgggaactcttctggttgggttcgctctgatatt
gctcgtaggaatggattgaagaaatcatattttcagagacttctggagagtgaaccatat
aataagcttaatagtatgtttgttatgcatctctag
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