Telopea speciosissima (New South Wales waratah): 122645528
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Entry
122645528 CDS
T07910
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03018
RNA degradation
tss03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122645528
09123 Folding, sorting and degradation
03018 RNA degradation
122645528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122645528
03041 Spliceosome [BR:
tss03041
]
122645528
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122645528
mRNA degradation factors
5'-3' decay
Lsm complex
122645528
Spliceosome [BR:
tss03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
122645528
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
M11L
Motif
Other DBs
NCBI-GeneID:
122645528
NCBI-ProteinID:
XP_043694774
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Position
11:complement(51717233..51724326)
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AA seq
98 aa
AA seq
DB search
MSSGPGLESLVDQTISVITNDGRNIIGILKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagtggtcctggactcgagtcccttgttgatcaaacaatatcagtcataacgaat
gatgggcgtaatataattggaatcctgaaaggttttgaccaggctacaaatatcattctc
gatgaatctcatgagcgagtttactccaccaaggaaggtgtccagcaacttgtattaggg
ctgtacatcatcaggggggacaacataagcattgttggggaattggatgaagagcttgat
tcgaatctggatttgtcaaaactgagggcacatcccctcaaacctgttatccattaa
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