Telopea speciosissima (New South Wales waratah): 122645725
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Entry
122645725 CDS
T07910
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122645725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122645725
03012 Translation factors [BR:
tss03012
]
122645725
Enzymes [BR:
tss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122645725
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122645725
Translation factors [BR:
tss03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122645725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
NACHT
T2SSE
ATPase
ABC_tran
Dicer_dimer
AAA_30
AAA_16
AAA_23
Motif
Other DBs
NCBI-GeneID:
122645725
NCBI-ProteinID:
XP_043694999
LinkDB
All DBs
Position
11:55875969..55916848
Genome browser
AA seq
1214 aa
AA seq
DB search
MPYSAFLRGYLRTGPYLTMSLRPTALQFQSRSNSRRSPETFKTTATVFGAMKDRAVAFGS
VYVPPRLRSVITSSANSGVSTRSLDFDWRDNQGLVYSPRGRSYPSLQPQQQQQSFQYGRY
AYDDYSDDDSERETESSSQVGASTLDNIDEWNWKLTMLIRNKDEQEVVSREKKDRRDFEK
LAALANRMGLYSRQYEKVVVFSKLPLPNYRSDLDAKRPQREVTISFGLQRRVDAQLREYL
SQKPMSGETFSNVPFSRSSSSGSIAADEGFFEQPESQRPTSVVMEKILRRRSLQLRNQQQ
AWQESPEGQKMLEFRRSLPAYKERDALLAVISQNQVVVISGETGCGKTTQLPQYILESEI
EAARGASCSIICTQPRRISAMSVSERVAQERGEKLGESVGYKVRLEGVKGRDTRLLFCTT
GILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAE
LFSSYFGGAPMVHIPGFTYPVRAHFLENVLEITGYRLTPYNQIDDYGQGKMWKMQKQAIR
KRKSQIASVVEDALEAADFKEHSLRTQESVSCWNPDSIGFNLIENVLCHICKKERSGAIL
VFMTGWDDINALKEQLQTHPLLGDASRVLLLACHGSMPSSEQRLIFEKPEDGVRKIVLAT
NMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAATRQRRGRAGRVQPGEC
YHLYPRCVYDAFSDYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQSPELLSVQNAI
EYLKIIGALDENENLTVLGRHLSMLPVEPKLGKMIILGAMFNCLDPILIVVAGLSARDPF
LAPFDKKELAESARAQFYARDYSDHLALVRAYEGWRNAEREQSGYEYCWKNFLSAQTLKA
IDSLRRQFFSLLKDIGLVDDNTDSCNAWSHDKHLVRAVICAGLFPGICSVVNKEKSISLK
TMEDGQVLLYSNTANARELKIPYPWLVFNEKVKVNSVFLRDSTAVSDSVVLLFGGNISRG
GLDGHLKMLGGDLEFFMKPALADTYLNLKRELDELIQNKLLNPKMQNRTHEELLSAVRLL
ISEDRCEGRFVFGRQVLTPSKITAMSPPRMFSQKGGGPGGDNSKSQLQTLLTRAGHEAPT
YKTKPLKGNQFRTTVEFNGMQFLGNPCQNKKLAEKDAAAEALKWLTGGNRSDRGDIDNMS
MLLKKSKKKHNRRT
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgccctactccgctttcttgcggggttatctcaggaccggtccttacctgaccatgtct
ctgagaccaaccgctttgcaatttcaatcccgttcgaattctcggaggagccctgaaacc
ttcaaaaccactgctactgtcttcggcgccatgaaggatcgagcagtagcgttcggcagt
gtgtacgttccaccacgcttgaggtctgttatcacttcctccgctaactccggcgtctca
actcgttctctggactttgattggcgggacaaccagggtctagtctatagccccaggggc
agatcttacccttccttgcagccgcaacagcagcagcagagctttcagtatggtcggtac
gcttacgatgattactcagatgatgactccgagcgtgaaacagagtcgtcgtcgcaagtg
ggtgcctccacactggataacattgatgagtggaactggaagttaaccatgcttattcgc
aataaagatgaacaagaggtggtgtcaagggagaaaaaggaccgacgtgattttgagaaa
cttgcggcattggctaacagaatgggtttatatagccgtcaatatgaaaaggttgttgtc
ttcagcaagctcccactgccaaactacagatctgacctagatgctaagcggccacagagg
gaggtgactatatcctttggtttgcaacgaagagttgacgctcaacttagagaatacctt
tcccaaaagcctatgagtggggaaactttttcaaatgtacctttttcaagatcaagcagc
agtggcagtattgcagctgatgaagggttttttgagcaaccagagtcccaaaggccaact
agtgtcgtcatggagaagatccttagacggagaagcttgcaacttcgtaatcagcaacaa
gcttggcaggaatctccggagggtcaaaaaatgttagagtttcgtcgaagtctccctgct
tataaagaaagggatgccttattagcagtcatctcacagaatcaggttgttgtcatctca
ggtgaaactgggtgtggtaagacgactcagcttccgcaatacattttggaatctgaaata
gaagctgctcgtggagccagctgtagcattatttgtactcagcctagacgaatatctgct
atgagtgtgtctgaaagagttgcacaagaaagaggggagaaattgggagaatctgttggt
tataaagtacggctagagggggtaaaagggagggatactcgcctgctcttctgcaccaca
gggatcttgctgagaagattgttggttgatagaaatttgaaaggtgtaactcatgttatc
gtggatgagattcatgagcgtggaatgaatgaagattttctgcttattgttctaaaagaa
cttctccctcgccggccagaattgagattgattttgatgagtgcaacgctgaatgctgag
cttttctcatcctattttggtggggctccaatggtacacataccaggttttacataccca
gttcgagctcattttcttgagaatgttcttgaaattactgggtatagattgactccatat
aaccaaattgatgattatggacaaggcaagatgtggaagatgcagaaacaagctatcaga
aagaggaagagccaaattgcttctgttgttgaggatgcacttgaagctgctgattttaag
gagcatagcctacggactcaggagtctgtgtcttgttggaatcctgattctataggcttt
aacctcatagaaaatgttctgtgccatatttgtaaaaaagagagatctggtgctattttg
gtatttatgactgggtgggatgacataaacgctctgaaggagcaactccaaactcatcca
cttttgggagatgccagcagagttctattgcttgcttgccatggttccatgcccagctcc
gagcagaggttaatattcgagaagcctgaagatggtgtgaggaaaatagtgcttgctacc
aacatggccgagacaagtatcaccattaatgatgtggtttttgttgttgattgtggaaag
gcaaaagagacatcatatgatgcattgaataacactccttgtttgctgccttcgtggatt
tctaaggccgctactcgacaaagaagaggaagagctggtcgtgttcaacctggcgagtgt
taccatctttatcccagatgtgtatatgatgctttttcagattatcaattgccagaactc
ttaagaacacctttgcaatcactttgtttgcaaatcaaaagtttacaacttggaagcatt
tcagagttcctgtctagggctttgcagtcgccggaactactatctgttcaaaatgctatt
gagtatttgaaaatcattggggctctagatgagaatgagaatctgacagtcctaggacgg
catttgtcaatgcttccggtggaacccaagctcggaaagatgattatattgggggccatg
ttcaactgcctggatccaatattaattgttgttgctggtcttagtgctagggatccattt
ttggcaccatttgacaaaaaggagcttgcagagtctgcaagagcccagttttatgctcgg
gattacagtgaccatcttgctcttgttcgagcctatgagggctggagaaatgctgaaaga
gagcaatctggatatgagtactgctggaagaatttcctctctgcacagacgctaaaagct
atcgattcccttaggaggcagttcttttctttgctcaaggatattggtctggttgatgac
aacacagacagctgtaatgcatggagccatgataagcacctcgtccgagcagtcatctgt
gcgggtctgtttcctgggatttgttcagttgtgaacaaggaaaagtctatatcattgaag
acaatggaggatggccaggtccttctgtactcgaacacggccaatgcccgggaattgaaa
attccatacccctggctagttttcaatgagaaggtgaaagtaaactcagttttcctccgg
gattcaacagctgtatctgattcggtggttcttctctttgggggaaacatctctcgaggg
ggactcgatggacacctgaaaatgttgggaggagacttggagttcttcatgaaacctgca
ttagctgatacatatctaaacctgaagagagagcttgatgaactaattcaaaataaactt
ctgaatcccaagatgcagaatcgtacccatgaggagctcctatcagcagtgcggttactg
atctcagaagaccgatgcgaaggaaggtttgtctttggccgccaggtcttaacaccttca
aagattactgcaatgtcaccgccacggatgttttcacagaaaggaggtgggcctggaggt
gataattccaagagccagctgcagacattgttaacccgggctggacatgaagcgcctaca
tacaagacaaaaccactgaagggcaaccagttccggactactgtggaatttaatggaatg
cagtttttggggaacccttgtcagaataagaagcttgcagagaaggatgctgcagctgag
gctttgaaatggttaacgggtgggaaccgatcagatcgaggagacattgacaatatgtca
atgctgctgaagaaaagcaagaagaaacataacaggagaacttaa
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