Telopea speciosissima (New South Wales waratah): 122646181
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Entry
122646181 CDS
T07910
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38-like isoform X1
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03013
Nucleocytoplasmic transport
tss03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122646181
03015 mRNA surveillance pathway
122646181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122646181
Enzymes [BR:
tss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122646181
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122646181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
122646181
NCBI-ProteinID:
XP_043695610
LinkDB
All DBs
Position
11:complement(37943818..37965658)
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AA seq
490 aa
AA seq
DB search
MADDKNGAASRIENLPKVNTPEVKRCWGDEVDDEESETAPSGYGEKELNIASLAIDENKN
INKFLDDPEDSNIKAITSGDTPYTSASTFEDLKLSHELLQALYVDMNFERPSKIQAISLP
MVLTPPYKNLIAQAHNGSGKTTCFVLGMLSRVNPTLKAPQALCVCPTRELAIQNLEVLRK
MGKYTGITSECAVPMDSTNKIPIAKRPPITAQIVIGTPGTIKKWMSAKKLSTRDMKILVF
DEADHMLDQDGFQDDSLRIMKDIERNSAHCQVLLFSATFNEEVKIFVSRVVKDGNQLFVK
KEELSLEAVKQYKVHCPGERAKVLVIKDKIFELGEKLGQTIIFVRTRKSADMLHKSLVEF
GWPCTNIQGALPQEVRDKIVKEFKDGLTKVLISTDILARGFDQAQVNLVVNYDLPVKHGT
SEPDYEVYLHRIGRAGRFGRKGAVFNLLCGDMDMTIMEKIEKHFGHNISEVPSWESDDDF
EAALKAAGLM
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgacaagaacggggctgcttctagaatcgagaatctgcctaaagtgaataca
ccggaagttaaacgttgttggggtgatgaagtagacgatgaagaatcagaaactgcccca
tctgggtacggagagaaggagctaaatattgcttcgctagctattgatgagaacaagaat
atcaacaagtttctggatgatccagaagattcaaacattaaagcaattacatccggtgat
acaccatatacgtctgcttctactttcgaggacttgaagctgtcgcatgaattgctgcaa
gcattatatgtcgacatgaattttgagaggcctagcaagattcaggcaattagtttgcca
atggttttgactccaccctataagaatctaattgctcaagcccacaatggttctggtaag
accacttgctttgtgcttgggatgttgagtcgggtcaatccaactctgaaagcaccacag
gctctttgcgtgtgtcctacaagagaattggcaatacagaacctggaagttcttcggaag
atggggaaatatacagggataacttctgaatgtgctgttcccatggatagcactaataaa
atccccattgcgaaacggccaccaatcactgcgcaaattgtgattggtacgccaggtaca
ataaagaaatggatgtcggcaaagaaacttagcacaagggatatgaaaattcttgttttt
gacgaggctgatcacatgttggatcaggatggctttcaggatgattctttaaggattatg
aaggatattgagagaaacagtgctcactgccaggtgcttcttttctctgctactttcaat
gaggaggtaaaaatttttgtatcgagagtggttaaagatggaaatcaactgtttgtaaag
aaagaagaattgtcactggaggcagtgaagcagtataaggtgcactgtccaggcgaacgt
gccaaggtactagtgatcaaggacaaaatctttgaattgggagagaagttggggcagacc
attatatttgtccgtactagaaagagtgccgacatgttgcataagtcactggttgaattc
ggttggccatgcactaatattcaaggtgctcttccgcaagaagttagggacaagatagtc
aaggagtttaaggatggtttaactaaagtcctcatatcaactgatattcttgcccgaggt
ttcgatcaagcacaggttaatttggttgtcaattatgatcttccggtgaagcatggaaca
tctgaacctgactatgaggtgtacttgcataggattggtagggcaggtcgttttggacgc
aaaggagctgtgttcaacttgctgtgtggtgacatggacatgacgatcatggaaaaaatt
gagaagcattttgggcataacatatctgaggtcccttcctgggagagtgatgacgatttt
gaagctgctttgaaagcagctgggttgatgtag
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