Telopea speciosissima (New South Wales waratah): 122646834
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Entry
122646834 CDS
T07910
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss04120
Ubiquitin mediated proteolysis
tss04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122646834
04120 Ubiquitin mediated proteolysis
122646834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tss04121
]
122646834
Enzymes [BR:
tss01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122646834
Ubiquitin system [BR:
tss04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122646834
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_5
zf-RING_11
zf_RING_Vps8
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
122646834
NCBI-ProteinID:
XP_043696378
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All DBs
Position
11:complement(29792547..29824965)
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AA seq
546 aa
AA seq
DB search
MRLQTYAGFSIVGALAIIYHAFNTRGQFYPAMVYLSTSKISLVLLLNMGLVIMCILWQLT
KRVFLGPLREAEVERLNEQSWREVMEILFAVTIFRHDFSVNFLAMVTALLLIKALHWLAQ
KRVEYIESTPYVPKLSHFRIVSFLGFLLLLDSLFLYSSLKYLIQTWQPSVSLFFAFEYMI
LATTTVSTFVKYVFYVSDMLMEGQWDRKPVYTFYLELIRDLLHLSMYLCFFLVIFMNYGV
PLHLIRELYETFRNFKVRVSDYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMVI
AKKLLCGHLFHVNCLRSWLERQHTCPTCRALVVPPENGTTAAGGYGVRSDFPQQGTDAAS
TSAQGSEGGAADNNLRQHQIRLQAAAAAAAVYEKSFVYPSVNASAWSPGYAVLPQVYLPS
ADSSSMDSTGERASFGQTQQNQFTIPGGLPNYTFIAFQEPGANSPSSERLGCNNVPVSRV
EVQERFLRHQIEVLQNQMKLLQQQKPEESIKMGPIMASDSRGKATASSSSTITDCSRDEE
SEEIDD
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgcaaacatatgccgggttcagtatagttggtgctcttgccattatttatcat
gccttcaatactagaggccaattttacccagccatggtgtatttatcgacctccaagatc
agtttggttcttcttctaaacatgggtttggtcatcatgtgcattttgtggcagctaacc
aaaagggtgtttcttgggccactccgtgaagcagaggttgagaggctgaatgaacagtct
tggagagaagtcatggaaatcctattcgcagtcactatattcaggcatgatttttccgtt
aattttcttgcaatggtcactgctctcctgctgattaaggctttgcactggttggctcag
aagagagtggaatacattgaatcaaccccatatgttcccaagctgtctcactttcggatc
gtttcttttttggggtttcttcttctgctggatagtctcttcctgtacagttccttaaag
tatttaatacagacatggcaaccttctgtttcgctcttctttgcgtttgagtacatgata
ctagcaacaacaacagtgtctacatttgtaaaatatgttttctatgtcagtgacatgttg
atggaaggacaatgggatagaaagcctgtctataccttctacttggagcttattcgtgac
ttgcttcacttatctatgtacctatgcttcttccttgtgattttcatgaactatggtgtg
ccattgcacttaattcgagaactctatgagaccttccgcaacttcaaggtccgagtttct
gattatattcgttatcggaaaatcacttcaaatatgaatgaccgtttcccagatgcgaca
cctgaagagcttaatgcaagtgatgcaacatgcattatttgtcgtgaggagatggtgata
gcaaaaaagctcctttgtggacatctttttcatgtgaattgcctccggtcatggttagag
cggcaacatacttgccctacatgcagagcgcttgttgttcctcctgaaaatgggacgact
gcggctgggggatatggagtcaggtctgattttcctcagcaaggaacggatgctgcaagt
acgtctgctcagggttcagaaggtggtgcagctgataataatttgaggcaacatcaaatc
agactccaagctgctgccgctgctgctgcagtatatgagaaatcttttgtttatccttct
gtgaatgcttctgcatggtccccaggatatgctgtacttccgcaggtgtatctgccttca
gcagactcctctagtatggattcaactggagaaagagcttcttttggacagacacaacag
aaccaattcactatccccggtggtcttcctaactatactttcatcgctttccaagaacct
ggtgccaattccccttctagtgaaagattgggctgcaataatgtacctgtttcacgtgtg
gaagtccaggagagatttcttcggcatcagattgaggtcctacaaaaccagatgaagctt
ctacagcaacaaaaaccagaagaatccataaaaatgggtcccatcatggcatcagatagc
agaggaaaggctactgcatcttcatcatcaaccattactgactgcagtcgtgacgaagag
agtgaagagattgatgattag
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