KEGG   Telopea speciosissima (New South Wales waratah): 122647516
Entry
122647516         CDS       T07910                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
tss  Telopea speciosissima (New South Wales waratah)
Pathway
tss03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tss00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    122647516
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tss03021]
    122647516
Enzymes [BR:tss01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     122647516
Transcription machinery [BR:tss03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     122647516
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_3
Other DBs
NCBI-GeneID: 122647516
NCBI-ProteinID: XP_043696841
LinkDB
Position
Unknown
AA seq 1621 aa
MIAEMEETLLSPLVVDGKINDIRFSLATPQEICTSSISDCPVTHPSQLTNPFLGLPLESG
KCESCGTAEPGQCEGHFGFIQLPVPVYHPCHVSELKRVLSLLCLNCLRMKKRKVKDTREN
DRSSNAPCAYCPDFPQLSIKEKKKDDVLYLELVLPPRSRLRAGFWDFLDRYGYHYGDNVR
RSLLPSEALEILKRIPEETRKKLAGKGCFSQYGYILQYLPVPPNCLSVPDISDGISIMST
DLSVSLLKKVLKEVETIRSSRSGAPNFESHEIEANGLQLAIAQYLHFRGSSKASRDMNSR
IGISKEINNSSTKEWLEKMRTLFIRKGSGFSSRSVITGDAYKGIDEIGLPLDIAQRITFE
EKVSIHNMEHLQKLVDNKLCLTYRDGASTYSLREGSKGYTSLRVGQVVHRRIMDGDIIFI
NRPPSTHKHSLQAFSVYVHNDHTVKINPLICGPFGADFDGDCVHLFYPQSLAAKAEVLEL
FSVEKQLCSSHSGNLNLQLVNDSLLSLKLMFKKYFFDKAAAQQLAMFVPNGFPEPVLLKA
CCSGAMWTALHTCFYCSGERHLIRESELLKVDFNRDVLQSLFNEVISSVFFQKGSKAAVK
LFNSVQPLLMENIFSVGFSVCLKDFFIPKVDTQDLQMRVQDMSPLLLHLRSTYNELVELQ
VENHLRSLKLPVVNFILKLSTLGSLIDSKSDSAITKIVQQLGFLGMQLSDRGKFYSKTLI
VDMTLFFQSKYLINGVEYPSEAFGLIKNCFFQGLNPYEELVHSISSREVLVRSSRGLTEP
GTLFKNLMAILRDVVICYDGTVRDVCSNSVVQFEYGGEAVTNPKSFYAAGEPVGVLAATA
ISNPAYKAVLDSSPSSNSSWEMMKEILLSRVNFMSEPIDRRIILYLHDCGCGKDYCRENA
ACIVQNQLKRVSLKDISVDFMIEYQKQRTSSGSLERNAGVVGHIHLDKMQLKSLNKSMHE
ILQECQETINSFRKRKKLAYLFKMTLLTVSESCCLQQSTDEKWTEFPCLLFFLQDTSADA
LESNSQILANIICPVLLETIVKGDPRVNSANVIWISPDTKTYACKTQKGEVALEVLLDKT
VVKKNGDAWRIVMDSCLPVIHLIDTRRSIPYGIKQVKELLGISCAFDQAVQRLSTSVKMV
TKDVLKEHLILIANSMTCTGDLIGFNRGGYKSLFRSLNVQVPFTEATLFTPRKCFERAAE
KCHLDSLSSIVASCSWGKHVAIGTGTNFEILWNNKEMGVNQDSGIDVYNFLQLVRSSNEV
ESSGACLGGEIDDLKLENGDLEFNLSPRCNSNFDRPIFDEAEVVCSLDEKQMPDKGKSNV
SNWECASSLPVESSGFRGWNTNERLDSENADAGNPKLNVWDSWGTDKAQTQGNWGTDKDK
AQASRSTNPSVDSSRSGGWNSLEAIHLEPSNDLGKWDEEPHTSGTNKNESQAQLGQQRES
RSWGATVAELPLSETVSSQGWGSQNVSDWTTNELEFQDRESIELPVESHPSDAKQESATQ
LDISHGWGSQSSSSGDWNKNEAHWGQQSESLGSSQVWGTVVQEQIKPTSSLGWGSDAGDW
KKKNRPSKPPGKFDDRNDWNASGIFTASRQRLDLFTFEEQNILSDVEPIMQTIKRIMHQT
R
NT seq 4866 nt   +upstreamnt  +downstreamnt
atgatagcagagatggaggagacacttttatcaccacttgttgtagatggaaaaataaat
gacatcagatttagtttagcaacacctcaggaaatttgtacctcgtccatcagtgattgt
cctgttacccatcctagtcagctcacaaatcctttccttggtctacctctagaatcgggt
aaatgtgaatcttgtggtactgctgaacctggacagtgtgaaggtcattttggattcatt
caattacctgtcccagtatatcatccttgccatgttagtgaactgaaacgtgtgttaagc
ctattatgtttgaactgcttgaggatgaagaagaggaaggtcaaggacactcgtgaaaat
gataggtcctcaaatgcaccatgtgcatattgtccggatttccctcaactgtctataaaa
gagaagaagaaagatgatgtactttatttggaattggtgcttccgcccaggtcaaggtta
cgagctggtttctgggatttcttagatagatatgggtaccattacggtgataacgttcga
cggagtttgcttcctagcgaggctcttgaaattcttaaaagaattcctgaggagaccaga
aagaagcttgctgggaaaggatgcttttctcagtatgggtatattttgcagtatttacct
gttcctccaaactgtttatctgtgcctgacatttctgatggaattagtatcatgtctact
gatctttctgtatcactgcttaagaaagtcctcaaggaagttgaaaccattaggagttca
agatcaggggctcccaattttgagtctcatgaaattgaagctaatgggttgcagttagca
attgcacaataccttcattttaggggttcttccaaggcatctcgagatatgaattcaaga
attgggatcagtaaagagataaataactcctctacaaaagaatggcttgaaaagatgaga
acattgtttatcagaaagggatctgggttctcttcacgcagtgtgataacgggtgatgca
tataaagggattgatgaaattggtctaccgctagatattgcccaaaggattacatttgag
gagaaagttagcatacacaacatggagcatttgcaaaagttggtggataataaattgtgt
ttaacatatagagatggtgcatccacatattcactgagggaaggatcaaaaggttataca
tctttgcgagttggccaagttgtccatcggcgaattatggatggggatattattttcatt
aataggccgccaagtacacacaagcactcattgcaagcattttcagtttatgttcacaat
gaccacactgtcaagatcaaccctctcatttgtgggccctttggagctgattttgatggt
gactgtgttcatttattctatcctcagtctcttgctgcaaaggccgaggtgttggagtta
ttttctgtagagaaacagttgtgcagctctcatagtgggaacctgaacttgcaattggtc
aatgattctctattgtcactgaagcttatgttcaagaaatatttctttgacaaagctgct
gcacaacaattagccatgtttgttccaaatggctttccagaacctgtcttgctgaaggct
tgctgttctggagctatgtggactgctttacatacttgtttttactgttctggggagaga
cacttgattcgtgaaagtgagttgttgaaagttgattttaatagagatgtgcttcagtcc
ttgttcaatgaggttatttcttctgttttctttcagaagggttcaaaagcagctgtcaag
ttatttaattctgtacagcctctgctgatggaaaatattttttcagtaggtttcagtgtt
tgcttgaaagatttcttcattcccaaagtggacactcaagatcttcaaatgcgtgttcaa
gatatgtcacctttgttacttcacttgagatcaacatataatgaattggtagagctacaa
gttgaaaatcacttgagaagcctaaaactgccagttgtaaacttcattttgaaattatcc
acactgggcagtttaattgactcaaaaagtgattcagctattacaaagatcgtccaacaa
cttggtttcttaggcatgcaactttcggataggggaaagttttactcaaagaccttaatt
gttgatatgactttgtttttccagagcaaatatcttattaatggagttgaatacccgtct
gaggcatttggtcttataaagaactgtttctttcaaggtttgaacccttatgaggagttg
gtccattctatttcttctagggaagtgcttgttcgttcatctagaggactaactgaacct
ggaacactgttcaagaatttgatggccattcttcgggatgttgttatatgctatgatggg
accgtgagagatgtctgtagcaattctgtggtccaatttgagtacggtggggaggctgta
actaatcccaagagcttctatgctgctggtgagcctgtaggtgttttagctgcaactgca
atttcaaatcctgcatataaggcagttcttgattcttctccaagtagcaattcatcttgg
gaaatgatgaaggaaatactactttccagagttaatttcatgagtgagccaattgatcga
cgtataattctgtacctgcatgactgcggttgtgggaaagattattgtagggaaaatgcc
gcatgtatagttcagaatcagttgaagagagtcagcctgaaggatatatcagttgacttt
atgattgaatatcaaaagcaacgaacttcgtctgggagtttggaaagaaatgctggcgtt
gttggtcatattcatcttgacaagatgcagttgaagtcactgaacaagagcatgcatgag
attcttcaagaatgtcaggagactatcaattccttccggaagaggaaaaagcttgcttat
ctttttaagatgactttgttgactgtcagtgaatcttgctgtcttcaacaatcaactgat
gagaaatggaccgagttcccatgcttactgttctttttgcaagatacaagtgctgatgca
ttggaaagtaactcacaaatcctggccaacatcatctgccctgttctgttggagacaatt
gttaaaggtgaccctcgagtaaactcagccaacgtgatatggattagtccagataccaag
acatacgcttgcaagactcaaaagggtgaggtggctctggaagttttgcttgacaaaacg
gttgtcaagaaaaatggtgatgcttggaggattgttatggattcctgccttcctgtaatc
catttaattgatacaaggagatcaattccttatgggataaagcaagtcaaggaattactt
ggtatttcatgtgcatttgatcaagcagttcagcgcctctcaacatctgtgaagatggtt
acaaaagatgtactcaaagagcaccttatactcattgctaatagcatgacatgcactggt
gatttgattggtttcaatagaggaggttacaaaagcctatttcgctctttaaatgtccaa
gtaccattcacggaagccacactatttacaccgaggaaatgttttgaaagggctgctgaa
aagtgtcatttagattctttatcgagcatagttgcatcatgttcttggggtaaacatgtt
gcaattggcactggaactaattttgagatcttatggaacaacaaagagatgggagtgaac
caagacagtggaatagatgtgtataattttcttcagttggtcagaagttcaaatgaagta
gaatcaagcggtgcatgtcttggtggagaaattgatgatcttaagctggaaaatggtgac
ttggagttcaatttatccccaaggtgcaactctaactttgataggccaatctttgatgaa
gctgaagttgtatgcagcttggacgaaaagcaaatgccagataaaggaaaatctaatgtc
tcaaattgggaatgtgcttcctctttacctgttgaatcaagtggtttcagaggatggaac
actaatgaacgtctagattcagagaatgctgatgctggaaatccgaaattgaatgtttgg
gatagttggggaacagataaggctcaaacacagggtaattggggaacagataaggataaa
gcacaagcaagccgttccacaaatccttcggtggattcttctagatccggtggatggaat
tccctagaggctattcatttggagccatccaatgatttgggaaaatgggatgaagaacca
catacgagtggcaccaataaaaatgaatcacaagctcagttgggccaacaaagagagtca
cgcagttggggtgctactgtggctgaactaccattaagtgaaactgtaagttcacaaggg
tggggctctcaaaatgtcagtgactggaccacaaatgaacttgaatttcaggacagagaa
tcaatagagttgcctgtcgaatcacacccctcagatgctaaacaagaatctgcaactcaa
ctggatatttcacatggttggggttctcagagttcaagttctggagattggaataagaac
gaagctcattggggccaacagagtgaatcacttggtagctcacaagtttggggtacagtg
gtgcaagagcaaataaagcctaccagttcacttggttggggttctgatgctggagattgg
aagaagaaaaatcgcccttcaaagccacctggaaaatttgatgatcgaaacgactggaat
gccagtgggatttttactgcaagtagacaacgtttagatctattcacatttgaggagcaa
aatattctttcagacgttgaaccaatcatgcagacgataaaaagaatcatgcatcaaacc
aggtag

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