Telopea speciosissima (New South Wales waratah): 122648885
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Entry
122648885 CDS
T07910
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122648885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122648885
Enzymes [BR:
tss01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122648885
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122648885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
122648885
NCBI-ProteinID:
XP_043698113
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All DBs
Position
1:39957888..39969259
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AA seq
639 aa
AA seq
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MSRLLQRRFLCSRGSSNSNKNSNQQQWKVKQVTKSNFSEALEEIKKHIQDSDFIAVSSQK
SGAFSAPWRRVLPFDTPETAYCKAKDAAEKFQLFQFAVCPFSIKESKVIAFPYNFHLFPR
DELNIGMPAYSFSCQTSYLTSMAREGFDFNVCIYDGISYLSRVQESSAKDRIGNPISRIH
PVKSSLAQSVADSVFLERTRSRVRHWINACKDPIPKKGTDDALIKSLRKLILGEMFGSRP
CMSIDICSERQVELVLEMLNEFSDLIGLIIPDKSGGPKAVRVVLTSSEEDKKLLECVIVV
LFGRGSLKILKRRKTSEFVAFERLSMQYLCPRNLLLPTTVLMGFNDAELTFIHSKFLAPL
PQSMSEFMCSLRFAFPCILDVNHLLKEIGPLKKAKNLPAAMSYLKRQFFAPLDMEIPHQG
FSEQEHEGKNHGHNVLRITHLFAKLCLILKVTRDSNETVNDDLNNAMESYANNFNPFCTS
VQEPIDGEGMVWMDNTRKVSTEDLAFLWGFRSGMSAGVLKSIFRGSHDVFSEDFEVRLVD
KSCAIVVFWTPGSAKVLLNVLGSGAVGSDGLTEMISEGLRGAGYELYKRICRLGLWESDL
AESLDRALEEPIPDVLGADSTKDLSEIYWSNDVIKLEDL
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggcttctgcaaagacgtttcctctgtagcagaggcagtagcaacagcaacaag
aactcaaatcagcagcaatggaaggtaaagcaggtaacgaagtcgaacttctcagaggct
ctggaggagatcaagaagcatatccaagattcagatttcattgccgtttcgtcgcagaag
agcggggccttctctgctccttggcgtcgagtgttgccattcgacacccctgagactgcc
tactgtaaagccaaagatgctgctgagaaatttcagctctttcagttcgccgtttgccct
ttttccataaaagaatccaaggtcatcgccttcccatacaactttcatttgtttccgagg
gatgagttgaatataggcatgccagcttacagtttttcatgtcaaacatcgtatttgacg
tctatggctcgggaaggttttgattttaatgtctgcatatatgatggtatatcatactta
tccagagtacaagaatccagtgcaaaagataggattgggaatcctatttctaggatccat
ccagtgaaatcttctttggcccaatctgttgctgattccgtgttcttggaaaggactagg
tcaagagttagacattggataaatgcatgtaaagatccaattccaaagaagggaactgat
gatgctcttatcaaatcactgaggaagcttatcttaggtgaaatgtttgggtcaagaccg
tgcatgagtatagatatttgcagtgaacgtcaagtagagctggtgctggagatgttgaat
gaattctctgatcttataggtctaattatcccagacaagagtgggggacccaaggcagta
cgagtggtactgacaagttctgaagaggacaagaaacttcttgagtgcgtaattgtagtt
ttgtttggtagagggagcttgaaaatattgaagaggaggaaaacaagcgagttcgtggct
ttcgagaggttatcgatgcagtatctgtgtcccagaaacctattgttgcctacaactgtc
ttaatgggattcaatgatgcagagttaacattcattcattcaaaattccttgctcctctg
cctcagagcatgagtgagttcatgtgctccttgcgctttgcttttccatgcatccttgat
gtcaaccatttgttgaaagaaattggtcctcttaaaaaggcaaaaaacttgcctgcagcc
atgtcctacttgaagagacaattctttgcgccccttgacatggaaattccacaccaaggt
ttctcggagcaggaacatgaaggcaagaaccacgggcataatgttctaagaataacacat
ttgtttgccaaactctgcttgatactaaaagtaactcgtgattctaacgaaacagtgaat
gatgatctgaataatgccatggaaagctatgcaaacaatttcaatcccttctgtaccagt
gtccaagaaccaattgatggagaaggcatggtgtggatggataatacaagaaaagtgagc
actgaagacctagctttcttgtggggattcagaagtgggatgtctgctggagtattgaaa
agcatattccgtggatcccatgatgtgttctctgaagattttgaggttcggttagtggac
aaaagttgcgctattgttgttttctggacacctggttcagctaaggtcttactcaatgtg
ctgggttctggggcagttggttctgatggtttgacggaaatgatttcagaaggtcttaga
ggagctggctatgagttatataagagaatatgcagattaggtttatgggaatcagattta
gctgaatcattggacagagccttggaagagcctatccccgatgtcttgggagccgattcc
acaaaagatctgtcagagatatactggagcaatgatgtgattaagcttgaagatctttga
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