Telopea speciosissima (New South Wales waratah): 122649044
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Entry
122649044 CDS
T07910
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122649044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tss03021
]
122649044
03019 Messenger RNA biogenesis [BR:
tss03019
]
122649044
Transcription machinery [BR:
tss03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122649044
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122649044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Motif
Other DBs
NCBI-GeneID:
122649044
NCBI-ProteinID:
XP_043698330
LinkDB
All DBs
Position
1:complement(28879885..28911253)
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AA seq
1063 aa
AA seq
DB search
MEMESSRRSIDRSREPGLKKPRLSEGAERDRGLNGVVDRDRSFQQRVSTVGSGPGAGPLL
SRFRTNEKDKNAERDEPVRGVYQQRQHQELVSQYKTAIAELTFNSKPIITNLTIIAGENV
HAAKGIAAIICANIIEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVD
SSIHSGMRHLFGTWKGVFPPATLQMIEKELNFSPATNGSSSGTPVSRSDSQSQRPPHSIH
VNPKYLEARQRLQQSNRNSQRPQREVLSEPVQGNTSVAYGDYEYGSDLSRRPDMGTGSGT
DKLSERELDKTWYGVGSSAVDSVVGQRNGSDAQRGFSNYQAPRSTQTVAQLPPTPSTAKK
SSRGISRNWKNSEEEEYMWDDMNFRLMDHGARDSSRRDGWTSDDSEKLEEEHLSRPRSDD
IGSRLNREAFSDSKSITQRGQATFGHRTSPTWSLQEPHLLDTHTSQTSMVSGGSDSWSSS
SLTMAGLRSQMVPSSVSSGVLEQQRHLPPGSASPSRQSPIHQHPRSPSSSSLHQHQQSHN
LSEQDHPQAQSFDQPALKPSQLAGLLNRVPQESFHIPVNPPGNSQNLQLNQSTPPQHLRT
SSALMPFPQLKPHAPLLQQPQAEKMLSQFSGQSQKLLHQGPNFGTLTTGSSLLSHSNCSS
ADPIGESNASSLLSAILKKGLLSNNLASGGLPNLNFQESGSLPSNMSIQPPLPNGPPPVQ
HAASSIPMVSEGSLLASASHGNASTISTLPQKTTVRPPLPPGPPPSSSIGGSTSVQMSSV
TSAAPNTLSNLLSSLVAKGLITTSTTESSTVSTTQVLSQNQNQSPGPITISSVSVSSCPA
AATLLSTSGNELPFTESCLKTTTSLSQGTTSESKGLIGIEFKPEIIRESHSSVISGLFDD
LPYHCEICGLRIRFEERLNEHMEWHASKNPEQSSCNMVSRRWYANLGDWIAGNRGHPSGP
TSAASTEVSAKVLEENEQAVPADESQCVCVLCGELFEDFYSFLRDEWMFKGAVYMSLPAR
EGNGGTSGGSAIQGPIVHANCISQSSVYDLRLTERVKLEQADG
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagttctcgtagatccattgataggtcgagagaaccaggtttaaagaaa
cctaggttgtctgaaggggccgaacgagatcgtggtttgaacggtgttgtcgatcgtgat
agatcgttccagcagagagtttctaccgttggaagcggccctggagctgggcccttactt
tcgaggtttagaacgaacgagaaggacaagaatgcggagagagatgagcctgttcgagga
gtttatcaacaacggcagcatcaagaacttgtcagtcagtataagacagctattgcagaa
ctgaccttcaattctaagcctatcatcactaacctgactattatcgctggggagaacgtc
catgctgccaagggaatcgcagccattatctgcgcgaatattatcgaggtacccagtgag
caaaagctaccatctctctaccttctagatagtattgtaaagaacattgggagagattac
atcaaatactttgctgccagactacctgaggtgttctgcaaggcctatagacaggttgac
tcttcaattcattctggtatgcgacatctttttgggacttggaaaggtgtatttccccct
gccactcttcagatgatagagaaagaacttaatttctcccctgccacgaatggttcatct
tctggtaccccagtatccaggtctgattcacaatcacaacgcccaccacatagcattcat
gtgaatcctaagtatttagaagcaaggcagcgccttcaacagtcaaacaggaactctcag
cgtccccaaagagaagtgttaagtgagcctgttcaagggaacaccagtgtggcatatgga
gattatgaatatggttctgatctttcgaggcgtccagacatgggaacagggagtggcact
gataagcttagtgagcgggaacttgacaagacttggtatggagtgggaagtagtgctgtg
gactcagttgttggccaaagaaatgggtctgatgcacagcgtggattttccaactaccaa
gcacctagatctactcaaactgttgctcagctaccgccaacaccgagcactgcaaagaaa
agtagcagagggatatctaggaactggaaaaactctgaggaagaagagtacatgtgggat
gatatgaacttcagattaatggatcatggggcccgtgatagctcaaggagagatggttgg
acttcggatgattcagaaaagctggaagaggaacacctttcacgacctcggagtgatgat
attgggtctaggcttaatagagaagctttctcggattcaaaatccattacacaaagagga
caagcaacatttgggcatcgaacatcaccgacgtggtcattgcaagaaccacacctctta
gatacccatacaagccaaacttcaatggtttcaggtggttcagattcttggagtagttca
tctttgaccatggccgggcttcgttcccagatggttccatcatcggtatcttctggagtc
ttagagcaacaacgacatcttcctccaggttctgcatccccatctagacagtctcccatt
caccagcatcctcgctcaccttcttcttcatcacttcatcagcatcaacaatcgcataat
ttgtcggagcaagaccatccacaagcacaatcctttgatcagcctgctttgaaaccatct
cagcttgcaggattattgaatcgtgtacctcaagagtctttccacatccctgttaatcca
cctggcaattctcaaaatttgcagttaaatcaatcaactcctccccaacatctacgaaca
tcatctgctttaatgccttttcctcaactaaagcctcatgctcctttattacagcagcca
caggcagagaaaatgctgtctcaattttctggtcagtcccagaagctactgcatcaaggc
ccaaattttggaactctaacaacagggtcttccctcctgagccattcaaattgttcctct
gcagatccaattggagaatcaaacgctagtagtttattgagtgcaattttgaaaaaagga
ctactttcaaacaacttagctagtggtggtctccccaaccttaatttccaggagtcgggg
tcgttgccatctaatatgagtatacagccccctctgccaaatggacctccccctgtccag
catgctgcatcctcaattcccatggtctcggaaggttctttattggcttcagcttcccat
gggaatgcatcaactatatcaacactacctcagaagacaactgtacggcctcctctgcct
cctggacctccaccttcttcatctattggaggtagcacatcagtgcagatgtcaagtgta
actagtgctgctcctaatactctttcaaatcttttgagttcattagttgccaagggatta
ataactacttcaacaacagagtcatcaactgtctctactacccaggtgttgagtcaaaac
caaaatcagagccctggcccaattaccattagctccgtgtctgtttcctcatgtccagct
gctgcaaccctcctttcaacttctgggaatgaacttccttttacagaatcttgcctgaaa
accacaactagcttgtctcaaggtacgacaagtgaatccaagggcctcataggtattgag
ttcaagccagagattatccgagaatcacattcgtcagttatcagtggcctctttgatgac
ctcccatatcattgcgagatctgcggtcttcgaattagattcgaggaaagactcaatgaa
catatggagtggcatgcttcaaagaatcctgaacaaagtagttgcaacatggtttcaagg
agatggtatgcaaatttgggtgactggattgccgggaacagagggcacccatctggacct
acatcagctgcatcaactgaagtttcagcgaaggtattggaggagaatgaacaggcagtc
cctgctgatgaaagccaatgtgtgtgtgtattatgtggggagctgttcgaggatttttac
agttttttaagagatgaatggatgttcaaaggagcagtgtatatgtccctcccggctagg
gagggcaatggcggaacttctggtgggagtgctatccagggtcccattgtgcatgcgaac
tgtatctcacaaagttctgtttatgacttgcgattgactgagcgtgttaaattggaacag
gcagatggatga
DBGET
integrated database retrieval system
