Telopea speciosissima (New South Wales waratah): 122649971
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Entry
122649971 CDS
T07910
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03013
Nucleocytoplasmic transport
tss03015
mRNA surveillance pathway
tss03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122649971
09122 Translation
03013 Nucleocytoplasmic transport
122649971
03015 mRNA surveillance pathway
122649971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122649971
03041 Spliceosome [BR:
tss03041
]
122649971
Enzymes [BR:
tss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122649971
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122649971
Spliceosome [BR:
tss03041
]
Complex C
Other components
EJC/TREX
122649971
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122649971
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
YihI
Motif
Other DBs
NCBI-GeneID:
122649971
NCBI-ProteinID:
XP_043699176
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All DBs
Position
2:complement(64512950..64543287)
Genome browser
AA seq
428 aa
AA seq
DB search
MGEVKENDAYEEELLDYEEEDDKAPDSVAAKGAGETAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKDLLKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPENADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaagttaaggaaaacgatgcttacgaggaagagcttctagactacgaagaagag
gacgacaaggcccccgattccgtcgcggccaagggtgcaggcgaaacagcgaagaagggc
tatgttggaattcacagctcgggattcagagattttcttttgaagccagagcttcttcgt
gcaattgttgattcagggttcgagcatccttcagaagtgcaacatgagtgcatccctcag
gccatattgggaatggatgtcatctgccaagccaaatctgggatggggaaaactgccgtc
tttgttctgtcaactttgcagcagattgagccagttgcaggtcaagttgctgcccttgtt
ttatgccatacaagggaattagcataccagatttgtcacgagtttgagagattcagtacc
tacttgccagatatcaaggttgctgtcttctatggtggcgtcaatatcaaaactcacaaa
gatttactgaagaatgagtgccctcacattgttgttggaacacctggaaggatattggcg
ctagcaagagataaggacctctcattaaagaatgtcaggcattttatccttgatgaatgt
gacaagatgcttgaatcacttgacatgcgaagagatgtccaggagattttcaagatgacc
cctcatgataagcaagtcatgatgttttcagcgacactcagcaaggagattcgccctgtt
tgcaagagatttatgcaagatcctatggaaatttacgtggatgacgaagccaagctgacc
cttcatggacttgtacagcattacattaaattgagtgagcttgaaaaaaatcgcaagttg
aatgacctactcgatgctttggacttcaatcaagttgtgattttcgtcaaaagcgtgagt
agagcagctgagctgaacaagttacttgtggagtgcaatttcccatctatctgcattcac
tctgggatgtcacaggaggaaaggttgacacgctacaagggtttcaaggaggggcataaa
agaattctagtggcaactgatttggtcggcaggggaatagatattgaacgtgtcaatatt
gttatcaactacgatatgcctgaaaatgctgacacctacttgcacagggtgggcagagct
ggcaggtttggtaccaaaggacttgcaattacctttgtctcatctgcttccgactctgat
gtcctcaatcaggttcaagagaggtttgaagtggacataaaagaactgccagagcagatt
gatacctctacttacatgccatcttga
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