Telopea speciosissima (New South Wales waratah): 122650033
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Entry
122650033 CDS
T07910
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122650033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122650033
03012 Translation factors [BR:
tss03012
]
122650033
Enzymes [BR:
tss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122650033
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122650033
Translation factors [BR:
tss03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122650033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
R3H
HA2_C
DEAD
nSTAND3
Ank_2
HA2_N
AAA_19
ATPase
AAA_22
Ank_5
AAA_23
NACHT
ABC_tran
AAA_16
T2SSE
Rad17
AAA_7
Myosin_head
Motif
Other DBs
NCBI-GeneID:
122650033
NCBI-ProteinID:
XP_043699267
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All DBs
Position
2:complement(82849013..82881843)
Genome browser
AA seq
1304 aa
AA seq
DB search
MAKSGKKGRNKGGQQNEGQNKENKSEKEKPTVAETTRVRISKILNELLAGNDEAYTFEAG
LSNVERAVVHELCRKMGMASRSSGRGNERRVTVYKKRKKNSNGVKGDEDLTYLTFSEETQ
LVLQGLFTRFPPEEGELSEEKIKNQDVKAHKIHWGKENSFCKPLKNKVEIAKKVNSLASR
MEKDPHMRQIAEERSRLPIASFKDVITSTVESHQVVLISGETGCGKTTQVPQFLLDYWWG
KGESCKIVCTQPRRISAISVAERIACERGENVGDSVGYKIRLESKGGKNSSIMFCTNGVI
LRVLVGKGKGNGTDSSRKEASDDTLNDLLEITHIIVDEIHERDRFSDFMLAILRDILPLC
PHLRVILMSATLDAERFSQYFGGCPIIRVPGFTYPVKVFYLEDVLSILKSAEDNHLDSAL
VSTELTEEERVTLDEAIDLAWESDEFDPLLELVSCEATPKIYNYQHSFTGVSPLMVFAGK
GRVGDVFMLLSFGADCNLCAKDGTTALQWAERENQGEAAEIIKQHIDNALTQSAEEQQHI
EKYLATIDPERIDFVLMEKLLRKICTDSKEGAVLVFLPGWDDINKTLERLLASPFFKDSS
KFVIISLHSMVPSAEQKKVFRRPPAGCRKIILSTNISETAVTIDDVVYVIDSGRMKEKSY
DPYNNVSTLHSAWVSKASAKQREGRAGRCQPGICYHLFSKTRAASLQDFQVPEIKRMPIE
ELCLQVKLIDPNCRIVDFLHKTLDPPILESIRNAIIVLQDIGALSQEEGLTELGEKLGSL
PVHPTISRMLFFSIMMNCLDPALTLACASDLKDPFVLPMAPDEKKKAAAAKAELASVYGG
HSDHFVVVAAFDCWKRAKEKGQEKKFCFQYFVSSSVMSMLSALRKQLQHELIRNGFIPED
ISSCSLNARDPGILHAVLVAGLYPMVGRMLPPFVRGQRAMVETASGNKVRLHPHSSNFKL
SLDKSDSRTLVIYDEITRGDGGMYIKSCTVVGPYPLLLLATDMVVAPSKQNDDEESDEDP
DASSIDEDEMEMRTSSAEERRERIMSSPDNIVSVVVDRWLTFKATALDVAQIYCLRERLA
AAMLFKVKHPREVLDPALGASVYAIACFLSYDGPSGISLPSESIESLTLMVNAARINKEA
AGKEVQSHGQGGSKVMVPDGSSSFLRSLMSDDDVHLKTPSINHKPRRPIPNNTRQNEPPP
PLLASVATMANHYIPPCYRHPRASVHNYVTARQNEPPPQPLTPIATDPYLTVTPAVNPHQ
VFPVGADPYLNAQSQAQVGYGSGRFGPYGRRGGSFKRKRGPKPQ
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggctaagtcaggaaagaaaggacggaacaaaggaggacagcagaatgaaggacaaaac
aaagaaaataagtctgagaaggaaaaacctaccgttgctgagaccacccgggttcgaata
tccaagatattgaatgaattacttgcaggaaatgacgaagcgtacacgtttgaagctggc
ctcagcaatgttgaacgtgctgtggtgcatgaactgtgtcggaaaatgggtatggcctca
agaagttctgggcgtggcaatgaacggcgtgttactgtctacaaaaagaggaagaaaaat
agtaatggtgtaaagggagatgaagatctcacctatttaactttttcagaagagacgcaa
ttggttttacagggtctatttacacgctttcctcctgaagaaggagaactgagcgaggaa
aagattaagaaccaggatgtaaaggctcacaagatacactgggggaaagaaaatagtttc
tgcaaaccattaaagaacaaggttgaaattgcaaagaaggtgaactcattagcttctagg
atggaaaaggacccacacatgagacagattgctgaagagaggtctaggcttccaattgca
tccttcaaggatgtcattacatcaacagtggaatctcaccaggttgtgctcatatctggt
gagactggctgtgggaaaactacacaggttccacaatttcttctagactattggtggggt
aagggtgagtcatgcaagattgtgtgtacccaacccaggcgtatatcagcaatatcagtt
gcggagagaattgcttgtgaaagaggagaaaatgttggtgatagtgttggatacaagata
aggttggagtcgaaaggtgggaagaactcatctattatgttttgcaccaacggtgttatt
ttgagggtactggttggcaaaggcaaaggcaacggcactgattcatcaaggaaagaggct
tcagatgatacattgaatgatttattagaaataacccacatcattgtggatgaaattcat
gaaagggatcgcttctctgattttatgctagcaattctcagagatatactccctttatgt
cctcatctacgagtgatacttatgagtgctactcttgatgctgaaaggttttcacaatat
tttggtggctgcccaattatccgggttccaggattcacttatccggtcaaggttttctac
ttggaggatgtactttctatcttgaaatcagcagaggataatcatcttgattctgcttta
gtgagtactgaactgacagaagaggagagagttaccctggacgaagctatcgacttggca
tgggagagtgatgagtttgatcctctcctagaacttgtttcctgtgaggcaactccaaaa
atatataattaccaacattcttttactggggtatcaccactgatggtgtttgctgggaaa
ggtagagttggtgatgttttcatgctcctttcttttggtgcggactgcaatctatgtgcc
aaagatgggacaactgcattacagtgggcagaacgagaaaatcagggtgaagctgctgaa
attatcaaacagcacattgataatgctcttactcagtctgcagaagaacagcagcacatt
gaaaaatatcttgcgactatagatcctgaacgcattgattttgttcttatggagaagttg
ttaaggaaaatatgtacggactcaaaggaaggagctgtacttgttttccttccaggatgg
gatgatataaacaaaacactggagagactacttgcttccccatttttcaaggattcctca
aagtttgtgataatatctcttcattctatggttccgtctgcagagcagaaaaaggttttt
cgacgcccaccagctggttgccgtaaaatcattctttctactaatatttctgagacagca
gtcaccattgatgatgttgtttatgttatagacagtggccggatgaaagagaaaagttat
gatccatacaataatgtatcaacactgcattcagcttgggtttccaaagctagtgcaaag
cagcgagagggacgtgctggccgctgccagccaggaatatgttaccatttgttctccaaa
actcgagcagcatctctgcaagatttccaagttcctgaaatcaagcggatgccaattgag
gaactgtgtctgcaggtgaagctcattgatccaaattgcagaatagtagatttcttacat
aaaacattggaccctccgattcttgaatccatacgaaatgctattatagttcttcaagat
attggggccttgtcacaggaagaagggcttacagaactaggggagaaacttggctctcta
ccagttcatccaacaattagcaggatgcttttcttttccataatgatgaattgccttgac
ccagctttgacactagcatgtgcatcagaccttaaagatccctttgttttgcctatggct
ccagatgaaaagaagaaagctgcggctgccaaggctgagcttgcttccgtgtatggtggg
cacagtgaccactttgtggtggttgcagcatttgactgctggaaacgagcaaaggagaag
ggtcaagaaaagaaattttgttttcagtactttgtctcttcaagtgtcatgagtatgttg
tctgccttgcgtaagcagctgcagcatgagctgattcggaatggctttatcccagaagat
atatcaagttgtagcctaaatgcaagggatccaggaatacttcatgcagtccttgttgca
ggtttgtatccaatggtggggagaatgcttccaccatttgtacgtggacaaagggctatg
gtggagacggctagtggtaataaggtccggttgcaccctcactcctccaattttaaactg
tcactggataaatctgacagtcgtaccctggtcatatatgatgagattacccgaggtgat
ggtggcatgtacataaagagttgtactgttgtgggaccataccctttactgttgcttgca
acagatatggttgttgctccttcaaagcagaatgatgatgaggagagtgatgaagatcct
gatgcatctagcatagatgaagatgaaatggagatgcgtacatcatctgctgaagaacgc
agagagcgaataatgtcatctcctgataatattgtttctgttgtcgttgatcggtggctt
acatttaaggctacggcacttgatgttgctcagatttactgcttgagggagcgattagca
gctgcgatgttgttcaaagtaaaacatccacgggaagttctagatccggctcttggggca
tctgtatatgcaattgcctgctttctgtcatatgatgggccaagtggtatctcattacct
tcagaatctatcgagtcattgacattgatggtcaatgcagctagaatcaacaaagaagcc
gcagggaaggaggtccagtctcatggtcaagggggaagcaaagtgatggtacctgatggt
agcagtagtttcctgaggtcgttgatgagtgatgatgatgtgcaccttaaaaccccatcc
attaatcacaaacccaggagacctatacctaataacacacgtcaaaatgagccaccaccc
cctctactggcctcggtagctacaatggcaaatcattacattccaccctgttatcgccat
cccagggcatctgtgcataactatgtcactgcacgtcaaaatgagccacctccacaacca
ttaaccccaattgccacagacccatatttgactgttaccccagcggttaacccacatcag
gtcttcccagtaggtgctgacccatatctaaatgcccaatcacaggctcaggttggatat
ggttcaggtaggtttgggccgtatggccgaagagggggttcttttaagcgaaagcgtggg
cccaaaccacaatga
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