Telopea speciosissima (New South Wales waratah): 122650161
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Entry
122650161 CDS
T07910
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122650161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122650161
03041 Spliceosome [BR:
tss03041
]
122650161
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122650161
Spliceosome [BR:
tss03041
]
Complex B
Other components
Prp19-related factors
122650161
Complex C
122650161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_12
TPR_2
TPR_19
NRDE-2
ARM_TT21
ARM_TT21_C
PPR
Motif
Other DBs
NCBI-GeneID:
122650161
NCBI-ProteinID:
XP_043699418
LinkDB
All DBs
Position
2:complement(10513292..10529945)
Genome browser
AA seq
914 aa
AA seq
DB search
MSIPKELYPSQDDLLYEEEILRNPFSLKLWWRYLIARNEAPFKKRAVIYERALKALPGSY
KLWYAYLRERLEIVRNLPITHYQYESLNNTFERALVTMHKMPRIWVMYLLSLTEQKLVTR
TRRTFDRALCALPVTQHERIWEPYLVFVSQKGVPVETSLRVYRRYLKFDPTHIEDFIEFL
LNSSLWQEAAERLAGVLNDPQFYSIKGKTKHQLWLELCDLLINHATEVSGMKVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRGLPEKARDIYEEGMMTVVTVRDFSVIFDTYSQFEESTL
AYVMEQLDLEEDGDIEDGSMEDNAVEVEGDPRLDFKLSESKFKTKIFRGFWLKDVYDVDL
RLARLEHLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPMK
AVGKPHTLWVAFAKLYEDHKDVANARVIFDKAVQVNYKTVDNLASVWCEWAEMELRHKNF
KGALELMKRATAEPSVEVKRRVAADGNEPVQMKLHKSLRLWAFYVDLEESLGTLESTRAI
YERILDLRIATPQIIINYALLLEEHKYFEDAFKVYERGVQIFKYPHVKDIWVTYLTKFVS
RYKEKKLERARELFEHAIEKAPAEYVKPLYLQYSKLEEQYGLAKRAMRVYDQAAKAVPDN
EKMGMYEIYIARAAEIFGVPQTREIYEQAIESGLPDKDVKTMCMKYAELEKSLGEIDRAR
AIYQFSSQFADPRSDADFWKRWHDFEVQHGNEDTFREMLRIKRSVAASYSQMHFILPEYS
MQKDQKLNLEETVDTLKRAGVPEDEMAALERQLAPAATNASAKDSGRKVGFVSAGVESQP
GVIRTPDGGRKVTANNEEIELPEDNDTENDDGVEIAQKPVPDEVFGDLVRNKEPSGEEPD
KLGALERIKRQRRA
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgtccattcctaaggagctctaccctagtcaggacgatctgctctacgaagaagagata
ctaaggaatcctttcagcttgaagctatggtggaggtacctcatcgctcggaacgaagca
ccattcaaaaaacgagctgtgatttacgaaagagctctcaaagctctccctggaagttac
aagctctggtacgcttatcttcgagaacgcctcgaaatcgttcggaatcttcccatcacg
cattatcagtacgagagcctcaataatactttcgaacgagcgctcgtcactatgcacaag
atgcctcggatctgggttatgtatcttctgagtttgacggagcagaaactggtcactcgt
acgcgtcggaccttcgatcgagctctctgtgctctccccgtcacccagcatgagcggatt
tgggagccctaccttgtttttgttagccaaaagggcgtacctgtcgagacttcccttagg
gtttatcgcagatacttgaaatttgatccaacacacattgaggatttcattgagttcctt
ctaaattcgagtctctggcaggaggcagcagagcggctggctggggtattgaatgatcct
cagttctattcaatcaagggcaagacgaagcatcaattgtggcttgagctatgtgatctg
ctcattaatcacgccactgaggtgtctgggatgaaggtggatgcaataatccggggtggt
atcaggaaatttacagatgaagttggacggctatggacttccctggcagactactacatc
cgaaggggtctccctgagaaggcaagagacatttacgaggaaggaatgatgactgtggtc
actgttagggatttcagtgtgattttcgacacttactcccaattcgaagagagtacgctt
gcttacgtaatggaacaattagatttagaggaggatggcgatattgaggatgggagtatg
gaggacaatgcggttgaagtggagggagatccacgcttggatttcaagctttcagagtcg
aaatttaagacgaagattttccgtggtttttggttaaaggatgtgtatgatgtggatttg
agattggctcgattggagcatcttatggatagaaggcctgaacttgctaatagtgttctc
ctcaggcaaaatccccataacgtcgagcagtggcatcggagggtcaagctttttgagggc
aatccgacaaaacagatactgacctacactgaagctgtgaggactgtagaccccatgaag
gctgttgggaagcctcataccttatgggttgcttttgcaaagctgtatgaggaccacaag
gatgttgctaatgcaagggttatttttgataaagcagtccaagtcaactacaaaaccgtg
gataatcttgcaagtgtttggtgtgaatgggcagagatggaattgagacacaagaatttc
aaaggggcactggagctaatgaagcgtgccactgcagaaccctcagttgaggtgaagcgg
agagtcgctgctgatgggaatgaaccagtgcagatgaagcttcacaaatccttgaggtta
tgggccttttatgttgatttggaggagagccttggaactttggagtccactcgtgctata
tatgagcggatacttgatctgaggatagccactccacagattataataaattacgctttg
cttttggaggagcataaatactttgaggatgcattcaaggtatatgaaagaggcgttcag
atctttaagtatccgcatgtcaaggatatttgggtcacgtatctcactaaatttgtcagc
cggtataaagaaaagaagttggaacgggcaagagagttgtttgaacatgctattgaaaag
gcacctgccgaatatgtcaagcctctgtatctacaatattcaaaattggaagagcaatat
ggtctagcaaagcgtgcaatgagggtttatgatcaagctgcgaaggctgtgccagataat
gagaaaatgggcatgtatgaaatttacattgctcgtgcagccgagatttttggtgttccg
caaacaagggaaatatatgagcaagccatagaatctggtctcccagacaaagatgttaag
accatgtgcatgaagtacgctgaattagagaagagcctaggagaaattgatcgtgctcgt
gcaatataccaattctcatcccagtttgcagatccacgatctgatgctgatttctggaaa
agatggcatgactttgaggttcaacatggaaatgaagacaccttcagagaaatgctacgc
atcaagcgcagtgttgctgccagctatagccagatgcactttatcctcccagaatattca
atgcaaaaagatcagaagttgaaccttgaggaaactgtggacacgctgaagcgtgctggg
gtccctgaagatgaaatggctgctctagaaagacagttggcccctgcagcaactaatgca
tctgccaaggatagtggcagaaaagtgggctttgtcagtgccggtgtggagtcacaacct
ggcgtgatccgaactccagatggagggaggaaggtaacagcaaataatgaggaaatagaa
ttgccagaggacaatgacacagagaacgatgatggagttgaaattgcccaaaaacctgtt
ccagatgaggtttttggggatttggtacgtaataaggagccgagtggggaggaacctgat
aaacttggtgcacttgagaggataaagaggcagagacgggcatag
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