Telopea speciosissima (New South Wales waratah): 122650764
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Entry
122650764 CDS
T07910
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122650764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122650764
04121 Ubiquitin system [BR:
tss04121
]
122650764
03036 Chromosome and associated proteins [BR:
tss03036
]
122650764
03400 DNA repair and recombination proteins [BR:
tss03400
]
122650764
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
122650764
Ubiquitin system [BR:
tss04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
122650764
Chromosome and associated proteins [BR:
tss03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
122650764
DNA repair and recombination proteins [BR:
tss03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
122650764
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4_2
zf-HC5HC2H
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-RING_6
zf-C3HC4_3
zf-HC5HC2H_2
zf-C3HC4_4
zf-RING_5
zf-RING_10
PHD_NSD
PI3_PI4_kinase
zf-rbx1
RTT107_BRCT_5
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
122650764
NCBI-ProteinID:
XP_043700084
LinkDB
All DBs
Position
2:77316310..77326436
Genome browser
AA seq
1043 aa
AA seq
DB search
MADIAHLEKMGRELKCPICLSLLNSAVSLTCNHVFCNLCILKSMKSGSNCPVCKVPFQRR
EVRPAPHMDNLVNIYKGMEVASGINIFTTQIAPATNISDGQNQGKDKSDLDNPDIGGNSC
RKNKNERKFKGKNIEHVKTNEKIPSPHLVKPSFPAKKRVHVPHYPLSETPTRPKRSDAGF
GKSVEQELLDSSVLPNKKPIITEAGEPILSPFFWLRERNPEDDDDTDKFCSQHTEGDIVT
DTPQKAPSFSDLKDSDDETPTTMTVNEEVHNGFKAVDAFDSEMFEWTQRACSPELFSTPI
KKQEVNKDELCVIQEESDATLHACTTSPHGGGTISEKLRSISAKQGAENRNADLSNPVPS
TNKSVKVPKEKKKSNKRAKRTNGRSQRKRLKLSLDGGHGEVPIDSSEIENLNEGNRCNIN
DDALNLVGRNIRRGKKTSSIATVLGKAQNVPTESIEANIPKIRNQGGDNVGSEFAVSSGE
GPRNDENLTLRCKAGKGSEIADAHPKKHPKRTKSQRVDDAIAKVLNEIPMNANQEYENMH
VQLPLSSCLKANNSETLNLGEKSDTMAKLRAKRRKKRLNNSTDAKSKDGSVDEVLDDSNK
DATKKTESIEHLKENLKVAHRKSETNDKVLAVANGGFLRKCETAPNQIQCAFCKSSQDSE
ASGEMMHYFRGKPVALDYYDEGSNVIHSHKNCTEWAPNVYFENDTAVNLETELARSRRIK
CSCCGIKGAALGCYEKSCRKSFHVPCAKLVPQCRWDGENFVILCPLHTSSKLPCETSGPQ
EKSRKRPIPKGESHASKIKAPVKHDLTVSQQWKHSGSFNKWVFCCSSLAAAEKETVSKFA
KLAGISVAKTWCSSITHVIASTDENGACRRTLKFLMGVLEGKWIMKIDWIKACMDALGPV
SEVQYEIREDIHGIRDGPGLGRLRVLNKQPKLFNGFTFYLMGEFTPSYKGYLQDLIFAAG
GTVLQRKPISKDQGVLLSESSKSIFIIYSLELLGKSDPVNKTTEICNRRRADAEALANSA
GAKVASNSWVLDSIAACKLQSLA
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggcggatattgctcacctggaaaaaatgggtagagagctcaagtgtcccatatgttta
agcctgctgaattcagcggtttcactcacctgcaatcatgtgttctgcaatttatgtatt
ttgaaatccatgaagtcaggatcaaactgcccggtttgtaaagttccgtttcagaggaga
gaggttcgacctgctcctcacatggataacttggtaaacatttacaaaggcatggaagtt
gcttcaggaatcaatatattcaccacccagattgcaccagcaaccaacatttctgatggg
cagaaccagggtaaagataagagtgatttggataatccggatattggtgggaattcctgt
agaaaaaacaagaacgaaagaaaattcaaagggaaaaatatagaacatgtgaaaaccaat
gaaaagattcctagtcctcacctggtaaaaccttcttttccagccaagaaaagggtacat
gtgccacattatcctctgtctgagaccccaactaggcccaaaaggtcagatgcaggattt
ggtaaatctgttgaacaagagctactggatagttcagtcctaccaaacaagaagcctatt
attacagaagcaggagagcccatattgtctcctttcttctggctaagggaaagaaatcct
gaggatgatgatgacacggataagttttgcagtcaacatactgagggtgatattgtcacg
gatacaccacaaaaggctccttcttttagcgatctaaaggattcagatgatgagactccc
actacaatgacagtcaatgaagaagtgcacaatggattcaaggccgtagatgcttttgac
agcgaaatgtttgaatggacacaaagagcttgctctcctgaacttttttcaacaccaatt
aagaaacaggaagtaaataaagatgaactctgtgttattcaagaggaaagtgatgcgact
ttgcatgcttgcactacatctcctcatggaggaggaaccatttcagaaaaattgagaagc
attagtgccaaacaaggagctgaaaacaggaatgcagatttgtctaatcctgtaccctca
acaaataaaagtgtcaaggtcccaaaggaaaaaaaaaaatccaataaaagggctaaaaga
accaatggaaggtcccaaaggaagcgtcttaaactatcattagatggaggtcatggagaa
gtacctattgattcaagcgaaatcgaaaatttgaatgaagggaatagatgtaacattaat
gatgatgctttaaatttggtgggaagaaacattaggaggggcaaaaagaccagttctatt
gctactgttctaggaaaagcacaaaatgttcctacagaatcaattgaagcaaacattcca
aaaatcaggaatcaaggaggtgacaatgtgggttcagagttcgctgtttcttctggtgag
gggcctagaaatgatgaaaatttaactttaaggtgtaaagctgggaaaggcagtgagatt
gccgatgctcatccgaagaagcatcctaaaagaacaaaaagccaaagagttgatgatgct
attgccaaggtgcttaatgaaattcctatgaatgcaaaccaagaatatgaaaatatgcat
gtccaattgcctctctcctcttgtctgaaggcgaataatagtgagactcttaatttgggt
gagaaatctgacacaatggctaaattgagggcaaagagaaggaagaagagattgaataac
tctactgatgctaagtcaaaggatgggtcagttgatgaagttttggatgattctaacaag
gatgctacaaagaagactgaaagcattgaacaccttaaagaaaatcttaaggtagctcac
agaaaatcagaaacaaatgataaggttcttgctgtcgctaatggtgggtttctgcgtaaa
tgtgagactgctcctaatcaaattcaatgtgctttctgtaagtcttctcaagattcagag
gcttccggagagatgatgcactactttagaggcaagccagttgctttggattattatgat
gagggatctaatgttattcattcacacaagaattgcactgaatgggcacctaatgtgtat
tttgaaaatgatactgctgtcaaccttgaaactgaattagcaagaagtagaaggattaaa
tgcagttgttgtgggatcaaaggtgctgctcttgggtgttatgagaaaagctgccgcaag
agctttcatgttccttgtgcaaagttagttccacaatgtcgatgggatggtgagaacttt
gtgattctatgccctcttcatacttcttctaaattgccttgtgaaacttctggacctcaa
gagaaaagcaggaagaggcctattccaaaaggggagtcccatgctagtaaaatcaaagca
ccagttaaacatgatttgactgttagccagcaatggaagcattctggatcttttaacaaa
tgggttttttgttgctcatcccttgctgcagcagagaaggaaactgtctctaagtttgca
aaattggctggtatttcggtggctaagacatggtgttccagcatcacccatgtcattgca
tctacagatgagaatggagcttgcaggagaactttaaaatttttgatgggtgtcttggaa
ggcaaatggataatgaagattgactggattaaggcttgcatggacgcattgggacctgtt
agcgaggttcaatatgaaatcagagaggacatccatggaatcagggatggccctgggtta
ggaaggctacgggtccttaacaagcaaccgaagcttttcaatgggttcacattctatttg
atgggagaatttacaccttcatacaaaggttacctgcaagatctaatatttgcagctgga
ggaactgttctacagagaaaacccatttcaaaagaccagggagtactattgtctgaatcg
tcaaaatcgatcttcataatttacagccttgagctactaggcaagtctgatcctgtaaat
aagaccactgagatctgcaatcgtagaagggctgatgcagaggctttggcaaattcagct
ggagctaaagtggcgagcaactcatgggttttggactccattgctgcctgtaagttgcaa
agccttgcatga
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integrated database retrieval system
