KEGG   Telopea speciosissima (New South Wales waratah): 122650764
Entry
122650764         CDS       T07910                                 
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
  KO
K10683  BRCA1-associated RING domain protein 1
Organism
tss  Telopea speciosissima (New South Wales waratah)
Pathway
tss03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:tss00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    122650764
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tss03019]
    122650764
   04121 Ubiquitin system [BR:tss04121]
    122650764
   03036 Chromosome and associated proteins [BR:tss03036]
    122650764
   03400 DNA repair and recombination proteins [BR:tss03400]
    122650764
Messenger RNA biogenesis [BR:tss03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Negative regulators of mRNA 3' end processing
     122650764
Ubiquitin system [BR:tss04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   BRCC complex
    122650764
Chromosome and associated proteins [BR:tss03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     122650764
DNA repair and recombination proteins [BR:tss03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-core complex
     122650764
SSDB
Motif
Pfam: BRCT BRCT_2 zf-C3HC4_2 zf-HC5HC2H zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-RING_6 zf-C3HC4_3 zf-HC5HC2H_2 zf-C3HC4_4 zf-RING_5 zf-RING_10 PHD_NSD PI3_PI4_kinase zf-rbx1 RTT107_BRCT_5 PTCB-BRCT
Other DBs
NCBI-GeneID: 122650764
NCBI-ProteinID: XP_043700084
LinkDB
Position
2:77316310..77326436
AA seq 1043 aa
MADIAHLEKMGRELKCPICLSLLNSAVSLTCNHVFCNLCILKSMKSGSNCPVCKVPFQRR
EVRPAPHMDNLVNIYKGMEVASGINIFTTQIAPATNISDGQNQGKDKSDLDNPDIGGNSC
RKNKNERKFKGKNIEHVKTNEKIPSPHLVKPSFPAKKRVHVPHYPLSETPTRPKRSDAGF
GKSVEQELLDSSVLPNKKPIITEAGEPILSPFFWLRERNPEDDDDTDKFCSQHTEGDIVT
DTPQKAPSFSDLKDSDDETPTTMTVNEEVHNGFKAVDAFDSEMFEWTQRACSPELFSTPI
KKQEVNKDELCVIQEESDATLHACTTSPHGGGTISEKLRSISAKQGAENRNADLSNPVPS
TNKSVKVPKEKKKSNKRAKRTNGRSQRKRLKLSLDGGHGEVPIDSSEIENLNEGNRCNIN
DDALNLVGRNIRRGKKTSSIATVLGKAQNVPTESIEANIPKIRNQGGDNVGSEFAVSSGE
GPRNDENLTLRCKAGKGSEIADAHPKKHPKRTKSQRVDDAIAKVLNEIPMNANQEYENMH
VQLPLSSCLKANNSETLNLGEKSDTMAKLRAKRRKKRLNNSTDAKSKDGSVDEVLDDSNK
DATKKTESIEHLKENLKVAHRKSETNDKVLAVANGGFLRKCETAPNQIQCAFCKSSQDSE
ASGEMMHYFRGKPVALDYYDEGSNVIHSHKNCTEWAPNVYFENDTAVNLETELARSRRIK
CSCCGIKGAALGCYEKSCRKSFHVPCAKLVPQCRWDGENFVILCPLHTSSKLPCETSGPQ
EKSRKRPIPKGESHASKIKAPVKHDLTVSQQWKHSGSFNKWVFCCSSLAAAEKETVSKFA
KLAGISVAKTWCSSITHVIASTDENGACRRTLKFLMGVLEGKWIMKIDWIKACMDALGPV
SEVQYEIREDIHGIRDGPGLGRLRVLNKQPKLFNGFTFYLMGEFTPSYKGYLQDLIFAAG
GTVLQRKPISKDQGVLLSESSKSIFIIYSLELLGKSDPVNKTTEICNRRRADAEALANSA
GAKVASNSWVLDSIAACKLQSLA
NT seq 3132 nt   +upstreamnt  +downstreamnt
atggcggatattgctcacctggaaaaaatgggtagagagctcaagtgtcccatatgttta
agcctgctgaattcagcggtttcactcacctgcaatcatgtgttctgcaatttatgtatt
ttgaaatccatgaagtcaggatcaaactgcccggtttgtaaagttccgtttcagaggaga
gaggttcgacctgctcctcacatggataacttggtaaacatttacaaaggcatggaagtt
gcttcaggaatcaatatattcaccacccagattgcaccagcaaccaacatttctgatggg
cagaaccagggtaaagataagagtgatttggataatccggatattggtgggaattcctgt
agaaaaaacaagaacgaaagaaaattcaaagggaaaaatatagaacatgtgaaaaccaat
gaaaagattcctagtcctcacctggtaaaaccttcttttccagccaagaaaagggtacat
gtgccacattatcctctgtctgagaccccaactaggcccaaaaggtcagatgcaggattt
ggtaaatctgttgaacaagagctactggatagttcagtcctaccaaacaagaagcctatt
attacagaagcaggagagcccatattgtctcctttcttctggctaagggaaagaaatcct
gaggatgatgatgacacggataagttttgcagtcaacatactgagggtgatattgtcacg
gatacaccacaaaaggctccttcttttagcgatctaaaggattcagatgatgagactccc
actacaatgacagtcaatgaagaagtgcacaatggattcaaggccgtagatgcttttgac
agcgaaatgtttgaatggacacaaagagcttgctctcctgaacttttttcaacaccaatt
aagaaacaggaagtaaataaagatgaactctgtgttattcaagaggaaagtgatgcgact
ttgcatgcttgcactacatctcctcatggaggaggaaccatttcagaaaaattgagaagc
attagtgccaaacaaggagctgaaaacaggaatgcagatttgtctaatcctgtaccctca
acaaataaaagtgtcaaggtcccaaaggaaaaaaaaaaatccaataaaagggctaaaaga
accaatggaaggtcccaaaggaagcgtcttaaactatcattagatggaggtcatggagaa
gtacctattgattcaagcgaaatcgaaaatttgaatgaagggaatagatgtaacattaat
gatgatgctttaaatttggtgggaagaaacattaggaggggcaaaaagaccagttctatt
gctactgttctaggaaaagcacaaaatgttcctacagaatcaattgaagcaaacattcca
aaaatcaggaatcaaggaggtgacaatgtgggttcagagttcgctgtttcttctggtgag
gggcctagaaatgatgaaaatttaactttaaggtgtaaagctgggaaaggcagtgagatt
gccgatgctcatccgaagaagcatcctaaaagaacaaaaagccaaagagttgatgatgct
attgccaaggtgcttaatgaaattcctatgaatgcaaaccaagaatatgaaaatatgcat
gtccaattgcctctctcctcttgtctgaaggcgaataatagtgagactcttaatttgggt
gagaaatctgacacaatggctaaattgagggcaaagagaaggaagaagagattgaataac
tctactgatgctaagtcaaaggatgggtcagttgatgaagttttggatgattctaacaag
gatgctacaaagaagactgaaagcattgaacaccttaaagaaaatcttaaggtagctcac
agaaaatcagaaacaaatgataaggttcttgctgtcgctaatggtgggtttctgcgtaaa
tgtgagactgctcctaatcaaattcaatgtgctttctgtaagtcttctcaagattcagag
gcttccggagagatgatgcactactttagaggcaagccagttgctttggattattatgat
gagggatctaatgttattcattcacacaagaattgcactgaatgggcacctaatgtgtat
tttgaaaatgatactgctgtcaaccttgaaactgaattagcaagaagtagaaggattaaa
tgcagttgttgtgggatcaaaggtgctgctcttgggtgttatgagaaaagctgccgcaag
agctttcatgttccttgtgcaaagttagttccacaatgtcgatgggatggtgagaacttt
gtgattctatgccctcttcatacttcttctaaattgccttgtgaaacttctggacctcaa
gagaaaagcaggaagaggcctattccaaaaggggagtcccatgctagtaaaatcaaagca
ccagttaaacatgatttgactgttagccagcaatggaagcattctggatcttttaacaaa
tgggttttttgttgctcatcccttgctgcagcagagaaggaaactgtctctaagtttgca
aaattggctggtatttcggtggctaagacatggtgttccagcatcacccatgtcattgca
tctacagatgagaatggagcttgcaggagaactttaaaatttttgatgggtgtcttggaa
ggcaaatggataatgaagattgactggattaaggcttgcatggacgcattgggacctgtt
agcgaggttcaatatgaaatcagagaggacatccatggaatcagggatggccctgggtta
ggaaggctacgggtccttaacaagcaaccgaagcttttcaatgggttcacattctatttg
atgggagaatttacaccttcatacaaaggttacctgcaagatctaatatttgcagctgga
ggaactgttctacagagaaaacccatttcaaaagaccagggagtactattgtctgaatcg
tcaaaatcgatcttcataatttacagccttgagctactaggcaagtctgatcctgtaaat
aagaccactgagatctgcaatcgtagaagggctgatgcagaggctttggcaaattcagct
ggagctaaagtggcgagcaactcatgggttttggactccattgctgcctgtaagttgcaa
agccttgcatga

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