Telopea speciosissima (New South Wales waratah): 122650990
Help
Entry
122650990 CDS
T07910
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss00040
Pentose and glucuronate interconversions
tss01100
Metabolic pathways
Module
tss_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122650990
Enzymes [BR:
tss01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
122650990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
122650990
NCBI-ProteinID:
XP_043700276
LinkDB
All DBs
Position
2:complement(64480702..64515304)
Genome browser
AA seq
464 aa
AA seq
DB search
MDRVTIFLIFLCIALLISSSNGFDATQPNSFDVITNGAVGDGITDDSAAFWKTWEAVCGA
DGSDTPTLIVPSGKTFLLKPVGFYGPCKVHNINVEVYGYRVAPDSISGYEGHTNEWLSFN
YIEGLNIYGTGQIDGRGSVWWWPQSTEMSNQERPTALVFHSCNGLQLSGLKHLNSPRNHI
SINGCNGVTISYVNIIAPENSPNTDGIDIASSTQVLIHDSYIGTGDDCVAINGGTSFINI
TKVTCGPGHGISVGSLGANGAHETVEEVHVKDCTFIGTMNGARIKTWQSGSGYARKISFE
QITLSAVNNPIVIDQYYPNYLQDGSDIEVSDIKYIGVQGTTTAENAITLKCSNSMGCYNI
EMTQINITSTVPGKETYSLCINAHGTATNCNPPLINKVDAMMYVRGLSSERVRAHMAWAV
EIIQLRSNGLDSKMEESICWEQEICFAVGTDFYASGFSASQKAF
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atggatcgtgtcaccatcttcttgatcttcttatgcattgccttactcatttccagtagt
aatgggtttgatgctacacaaccaaattcttttgatgtgataaccaatggagctgttgga
gacggcataactgatgattcggcggccttttggaaaacatgggaagccgtgtgtggagca
gatggttcagacactcctaccctcatcgtaccttctgggaagacattcttgttgaagcct
gtggggttctatggtccttgcaaagtccacaacatcaatgttgaggtttatgggtacaga
gttgcgcccgattctatttcgggatatgagggacacactaatgagtggctttccttcaat
tacatagaaggcctcaacatctatggaactggccaaattgatggccgaggcagtgtttgg
tggtggccacagtctactgagatgagcaaccaagaacgacccacggcactagtattccat
agttgtaatggtcttcaactaagtggactaaagcatttgaacagcccaagaaaccatatc
tccattaatggctgcaatggagtaactatttcatatgtcaatatcattgcaccagaaaac
agcccaaatactgatggtattgacatagcatcctcaacccaagttctaatccatgactct
tacattggtacaggtgatgattgtgtggccattaatggtggcacctcttttatcaacatt
accaaggttacatgtggaccaggccatggcataagtgtgggaagcttaggagcaaatgga
gctcatgaaacagtggaagaagtccatgtgaaagattgtactttcattggaaccatgaat
ggagcaaggatcaagacatggcagagtggatctggatatgcaaggaagatctctttcgag
caaattacactttcagcagtaaacaaccccatcgtcatcgaccaatattaccctaattac
ttgcaagatggttcagacattgaagtgagcgacatcaaatacataggagtgcaagggact
acaactgcagagaatgccatcacattgaagtgcagtaatagcatgggttgctacaacatt
gaaatgacccaaatcaatatcacatcaacagttccaggcaaagagacttactctttatgc
attaatgcccatggaacagctacaaattgtaatccacctttaataaacaaggtggatgct
atgatgtatgtgcgaggactttcgtccgaacgagtacgtgcacacatggcgtgggctgta
gagatcatacagttacgatctaacggactagattcaaagatggaagaatccatttgttgg
gaacaggaaatctgttttgctgtaggaacagatttctatgcttctggcttttctgcttct
caaaaggctttctga
DBGET
integrated database retrieval system
