KEGG   Telopea speciosissima (New South Wales waratah): 122651283
Entry
122651283         CDS       T07910                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
tss  Telopea speciosissima (New South Wales waratah)
Pathway
tss04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:tss00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    122651283
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:tss04131]
    122651283
Membrane trafficking [BR:tss04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    122651283
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 zf-RING_Vps41 Clathrin WD40_WDHD1_1st zf_RING_Vps8 WD40 WD40_CDC20-Fz Beta-prop_HPS5 zf_RING_Vps8_fungal WDR55 WD40_Prp19 Beta-prop_EML_2 zf-RING_2 EIF3I zf-RING_11 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR11_2nd WDR90_beta-prop_4th WD40_like zf-RING_UBOX PEP5_VPS11_N TPR_7
Other DBs
NCBI-GeneID: 122651283
NCBI-ProteinID: XP_043700552
LinkDB
Position
2:complement(11207620..11242461)
AA seq 945 aa
MAHNPSENGIKDDDERDGRQEEEEEEEPRLKYQRMGGSIPSLLSNDAASCIAVAERMIAL
GTHNGTVHILDLLGNQVKELSAHTATINDLSFDIEGEYVGSCSDDGYVVISSLFTDESLK
FEYHRPMKTIALDPLYSRKSSRRYVTGGLAGHLYLNSKKWIGYRDQVLHSGEGPIHAVRW
RTDLIAWVNDAGVKVYDTANDQWLAFIERPRRSPYPEPLLPHLVWQDDTLLVIGWGASVT
IAAIRTNQCNGANGIQRPISISSTKHVDIVASFQTSYFISGIAPYGDALVVLAYIPEKED
GEKECSSSVRSCQGTAQRPEVRIVTWENDELATDALPVHGFEHYKGKDYSLAHAPFSGCS
YAGGQWAAGDEPLYYIVSPKDVVIAKPRDAEDHISWLLQHGYHEKALAAIEAEQGRTELL
DEVGIRYLDHLILERKYAEAASLCPKLLRGSASAWERWVFHFAHVRQLPVLVPYIPTENP
RLRDTAYEVTLVALATNPSFHKDLLSTVKSWPPAIYSALPVISAIEPQLNTSSITDTLKE
ALAELYVTTAQYERALALYADLMKPEIFNFIEKHNLHDAIHDKVVQLMVLNCKCAVLLLI
QHKDLIAPSEVVSQILDASDNCDSRYFLHLYLHSLFEIDPHAGRDSHDMQVELYADYDPK
MLLPFLRSSQHYTLEKAYDTCIKKNLLREQVFILGRMGNSRQALAVIINELEDIREAIEF
VAMQHDDELWEELIKQCLHKPEMVSMLLEHTVGHLDPLYIVKMVPNGLRIPRLRDRLVKI
ITDYRTETSLRHGCNDILKADCVNLLVKFYKEARHAVFLGSGEEEPRAKRNDNRAAQATG
KVAGIGILELKSKTRGGGRCCVCFDPFSIQNVSVIVFYCCHTYHVTCLMDTTNSARHKSG
SRATFQESVSSNHYNYDDDIDDDDVDDTQSGASHLRCILCTTAAG
NT seq 2838 nt   +upstreamnt  +downstreamnt
atggcccataatccttctgaaaacggcatcaaagacgacgatgaaagagatggaagacaa
gaagaagaagaagaagaagagccgaggctcaagtaccagaggatgggaggtagcatccct
tcgctcctatcaaacgatgccgcctcttgtatcgctgttgctgagcggatgatcgctctt
ggcacccacaacggtaccgttcacatcctcgatttactcggcaaccaggttaaggagtta
tctgctcacactgctaccatcaatgaccttagctttgacatagaaggtgaatatgtagga
agctgttcagatgacggatatgttgtaataagcagcctttttactgatgagagtttgaaa
tttgagtatcatcgtcctatgaagaccattgctctagatccactttattcaagaaaatct
tctcgaagatatgtgactggtggtttagcaggtcatctatatctaaactccaaaaaatgg
ataggctaccgtgatcaggttctgcactctggtgaaggtccaatacatgcagtgaggtgg
agaacagatctcattgcttgggttaatgatgcaggtgtgaaagtttatgacactgccaat
gatcagtggcttgcatttattgagagaccacgaagaagcccatatcctgagcccttgctc
cctcacttggtttggcaggatgatactctcttggttattggctggggagcttcagtaaca
attgctgcaattagaacaaatcagtgtaatggagccaatgggatacaaaggcctatatcc
atatctagtacgaagcatgtggatattgtggcatcttttcaaacaagctacttcatttca
ggaattgctccatatggtgatgccttggttgttcttgcttatattcccgaaaaagaggat
ggagagaaggaatgtagcagttcagttcgatcatgccagggaaccgcgcagaggccagaa
gtacgtatagtcacatgggaaaatgatgaacttgcaacagatgctcttcctgtgcatggc
tttgagcattacaagggaaaggattattcccttgctcatgctcctttctcaggttgcagc
tatgcaggtggtcagtgggctgctggtgatgaaccattgtactatatagtatctccaaag
gatgtagtaattgcaaagcctagagatgctgaagatcatatatcttggcttcttcaacat
ggataccatgaaaaagcactagccgctatcgaagcagaacagggacggactgagcttctt
gatgaggtgggtatacgatatcttgatcatttgattttggaaaggaaatatgctgaagct
gcatctttgtgtcccaagttattacgtggatctgcttctgcatgggagagatgggttttc
cactttgctcatgtccgccaacttcctgtgttggttccatacataccaacagaaaacccc
agattgcgtgatactgcttatgaggtgactcttgtagcccttgcaacaaatccatctttc
cacaaggatctcttgtcaactgttaaatcctggccaccagcaatatattctgctttgcct
gtcatatcagcaatagaacctcagcttaatacttcatctataactgacacactcaaagag
gcattggctgagttgtatgtaaccactgcacaatatgagagagcgctagcattgtatgct
gatcttatgaagcctgaaattttcaacttcatcgaaaaacataacttacatgatgccatt
catgacaaggttgtgcaactgatggtattgaactgtaaatgtgcggtcttgttactgatc
caacacaaggatttgattgctccatctgaagtagtttcacaaatcttggatgccagtgat
aattgtgattcaagatatttcttgcacttgtatctgcattcactatttgaaattgatcca
catgctgggagggactcccacgacatgcaggtagagctctatgcagattatgatccaaag
atgcttcttccttttcttcgtagtagtcagcattacacgcttgaaaaggcatatgacact
tgcatcaaaaaaaatcttttgagagagcaggtgttcatccttgggaggatgggaaattca
aggcaagcccttgctgttatcataaacgaattggaggatataagagaggctattgaattt
gtggccatgcagcatgatgatgagctttgggaagaactaattaaacagtgtctccacaaa
cctgaaatggtgagtatgttgttggagcatactgttggtcatcttgatccactttatatt
gtaaaaatggtgccgaatggcttgagaataccccgccttagggatcgattggtcaaaatc
atcacggattacaggactgagacatctttgagacatggatgcaatgatattctcaaggca
gactgtgttaacttgttggttaaattttataaggaagccaggcatgcagttttcttgggt
agtggagaagaggaacctcgagcaaaaaggaatgataatagagcagctcaggccactggc
aaagtagctggtatcggaatattggagctcaagtcaaaaactaggggtggtggaaggtgt
tgtgtttgctttgatcccttctccattcagaatgtctcggtcattgtattctactgctgt
cacacttatcatgttacctgtctcatggatactacaaattctgcccgtcataagagtggg
tcccgagctactttccaagaatctgtatcaagtaatcattataattatgatgatgatatc
gatgatgatgatgtagatgatacccagtcgggtgcatctcacttgcgttgtatcttatgt
actacagctgctgggtga

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