Telopea speciosissima (New South Wales waratah): 122651325
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Entry
122651325 CDS
T07910
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03022
Basal transcription factors
tss03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122651325
09124 Replication and repair
03420 Nucleotide excision repair
122651325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tss03021
]
122651325
03400 DNA repair and recombination proteins [BR:
tss03400
]
122651325
Transcription machinery [BR:
tss03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122651325
DNA repair and recombination proteins [BR:
tss03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122651325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Tfb4
VWA
IBR
Motif
Other DBs
NCBI-GeneID:
122651325
NCBI-ProteinID:
XP_043700612
LinkDB
All DBs
Position
2:10260168..10263866
Genome browser
AA seq
440 aa
AA seq
DB search
MSGIGIDRRFEPRNSYNGDEKRLAADGQEEEEEDDDGGNGRGMEAWERAYADERSWESLQ
EDESGCLRPIDSNILNHAQYRRRLRALSSSTTSSRIQKGLIRYLYIVIDLSRAAAEMDFR
PSRMVVVAKQVEAFIREFFDQNPLSHIGLVTIKDGVAQCLTDLGGSPESHVKALMGKLEC
SGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGDVMETIQKCKKSKIRCSVV
GLSAEIYICKHLCQETGGSYTVALDESHFKDLLLEHAPPPPAIAEFAVASLIKMGFPQRA
AEGFVSICACHKEAKVGGGYTCPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPIT
PFDEVPSSLLNNPQHRLPRICFGCQLSLLNSGNKSSFRVACPKCNRHFCLDCDIYIHESL
HNCPGCESLRRSKTMNSTEE
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgagcggtattggtatcgacaggagatttgaacccagaaattcctacaatggtgatgag
aagcgattggctgcagacggccaagaagaagaagaggaagacgacgacggcggaaatggg
agaggtatggaggcgtgggagagagcttacgcggacgagagatcctgggagtctcttcaa
gaggacgagtccggctgtcttcgccccatcgacagtaatattcttaatcatgctcagtat
cgccgccgcctacgcgccctatcctcatctaccacatcttccagaatccagaagggtctc
attcgctacctttacattgtcatcgatctttccagggcagctgcggaaatggacttccga
ccaagtcggatggttgtagttgcaaaacaagtagaagccttcattagagagttctttgat
cagaacccacttagtcatattggcctggtaactataaaagatggggttgctcagtgctta
acagatttaggtggcagtccagaatcccatgtaaaggcattgatgggtaaactggagtgc
tcaggtgattcctctctacagaatgctctagatcttgttcacggctatctgaaccaaatc
ccatcctatggtcatcgcgaagtcttaatcttatattctgctctcagtacctgcgatcca
ggggatgtaatggagactatccagaaatgcaagaaatccaaaataaggtgttcagttgtt
ggtctttctgcagaaatttatatatgtaaacatctttgtcaagaaactggaggatcgtat
acggtggcactggatgagtcacattttaaagacttgttgctggagcatgctcctccacct
cctgcaatagcagaatttgctgttgctagtttgatcaagatgggcttcccacaaagagca
gcagagggttttgtctctatatgcgcttgccacaaagaagccaaggttggtggcggctat
acatgtccaagatgcaaagcacgtgtttgtgagctacctactgaatgtcggatttgtggg
ttgacgcttgtttcatctccccatttggctaggtcatatcatcatctatttcccataaca
ccatttgatgaggttccttcctcacttttgaacaatccacagcaccggttaccaagaatt
tgttttggttgccagctgtctcttctcaattctggaaataaatccagctttcgtgttgct
tgcccaaagtgcaaccggcacttttgccttgattgtgatatttatatccatgagagcttg
cataattgcccgggttgtgagagcctccgacgttcaaagacaatgaattcaactgaagaa
tga
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