Telopea speciosissima (New South Wales waratah): 122651428
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Entry
122651428 CDS
T07910
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122651428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122651428
03012 Translation factors [BR:
tss03012
]
122651428
Enzymes [BR:
tss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122651428
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122651428
Translation factors [BR:
tss03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122651428
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
ATPase
ABC_tran
Dicer_dimer
BNR_2
Motif
Other DBs
NCBI-GeneID:
122651428
NCBI-ProteinID:
XP_043700741
LinkDB
All DBs
Position
2:complement(51994443..52114191)
Genome browser
AA seq
1209 aa
AA seq
DB search
MPYSALLRGYFRTGPYLIMTLRPTALQLSFNFYPRSPKTLKTSTVFGAMKDRAQAYGTVC
APPPLRSVITSSASSDVPTRFLDFDWRDSQGLVYSRRGSSYPYWQPQQNFQYGRYAYDDY
SDDDSEREIEPSSQVGASTLDNINEWNWKLTMLIRNKDEQEVVSRERKDRRDFEQLVALA
SRMGLYGRQYDKVVVFSKVPLPNYRSDLDDKRPKREVIVSFDLQRRVDAQLREYLSRKRM
KRETFPNAAFPRSSSSGSIATDEGYFEQPEPQMPTSVVMEKILRRRSLQLRNQQQAWQES
PEGQKMLEFRRSLPAYKERDALLTVISQNQVVVISGETGCGKTTQLPQYILESEIDASRG
ATCSIICTQPRRISAMSVSERVAAERGETLGESVGYKVRLEGMKGRDTRLLFCTTGILLR
RLLVDRNLKGVSHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLNAELFSSY
FGGAPMVHILGFTYPVQAHFLENVLEMTGYRLNPYNQTDDYGQDKMWKMQKQALRKRKSQ
IASVVEDALEAADLKEYSPQTRESLSCWNPDSIGFNLIENVLSHICRKERAGAILVFMTG
WDDINALKEQLQSHPFLGDPSRVLLLACHGSMPSAEQRLIFEKPEDGVRKIVLATNMAET
SITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAVRQRRGRAGRVQPGECYHLYP
RCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQSPELLSVQNAIEYLKI
IGALDENENLTILGRHLTMHPVEPKLGKMLIYGAIFNCLDPILTVVAGLSVRDPFLMPFD
KKELAEAARAQFSAQDYSDHLALVRAYEGWKDAEREQSGYEYCWKNFLSAQTLKAIDSLR
RQFFSLLKDTGLVDYNTDNCNAWSHDEHLIRAVICAGLFPGICSVVNKEKSISLKTMEDG
QVLLYSNTVNARESKIPYPWLVFNEKVKVNSIFLRDSTAVSDSLVLLFGGNISRGGLDGH
LKMLGGYLEFFMKPALADTYLNLKRELDELVQNKLLNPKMDIRTHEELLSAVRSLISEDR
CEGRFVFGRQPPTPSKTASLSPPQKFSRSRNGPGGDNSKSQLQTLLTRAGHEAPTYKTKQ
LQNNQFQTTVEFNGMQFMGQPCQNKKLAEKDAAAETLEWLTGGTQSSREDIDNMSMLLKK
SKNKHHRRT
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgccctactccgctctcctgcggggctacttcagaactggcccttatctgatcatgact
ctgagaccaaccgctttgcaattgtcgttcaatttttatcctcgaagccctaaaaccttg
aaaactagtacagtctttggagccatgaaggatcgagcccaagcgtacggcactgtctgc
gctcccccaccgttgaggtctgtgatcacttcctctgcttcctctgacgtacccactcgt
tttctagactttgattggcgggacagccagggtctcgtctatagccgtaggggcagttct
tacccttactggcagccgcagcagaactttcagtatggtcggtacgcttacgatgactat
tcagacgatgactctgaacgtgaaattgagccttcgtcgcaagtcggtgcttccacactt
gataacattaatgagtggaactggaagttaaccatgcttattcgcaacaaagatgaacaa
gaggtggtttcgagggagaggaaggaccggcgtgattttgagcaacttgtggcattggct
agcagaatgggtttatatggccgtcaatatgacaaggttgtagtctttagcaaggtccca
ttgccaaactacagatctgacctagatgataagcggccaaagagggaggtgattgtatcc
tttgatttacaaagaagagtggatgcccaacttagagaatacctttctcgaaagcgaatg
aaaagggaaacttttccaaatgcagcctttccaagatcaagcagcagtggcagtattgca
actgatgaaggatattttgagcaaccagagccccagatgcccactagtgtcgtcatggag
aaaatccttagacggagaagcttgcaacttcgtaatcagcaacaagcttggcaggaatct
ccagagggacaaaaaatgttagagtttcgtcgaagtctccctgcctataaagaaagggat
gccttgttaacagtcatctcacagaatcaggttgttgtcatctcaggagaaactggctgt
ggtaagacgacacagcttcctcaatacattttggagtctgaaatagatgcttcccgtgga
gctacctgtagcattatttgtactcagcctagacgaatatctgctatgagtgtttctgaa
agagttgctgcagaaagaggggagacattgggagaatctgtcggttacaaagttcggctg
gagggtatgaaaggaagggatactcgcctgcttttttgtaccactgggatcctgttgaga
aggttgttggttgatagaaatttgaaaggtgtaagtcatgtaattgtggatgagattcat
gagcgtggaatgaatgaagattttctgcttattgttctgaaagatcttctccctcgccgg
ccagaattgagattgattttgatgagtgcaaccttgaatgctgagctattctcatcctac
tttggtggggctccaatggtacacatactgggttttacttacccagttcaagctcatttt
ctggagaatgttcttgaaatgactgggtatagattgaatccatataaccaaacagatgat
tatggacaagacaagatgtggaagatgcagaaacaagctctcagaaagaggaagagccaa
attgcttctgttgttgaggatgcacttgaagctgctgatcttaaggagtacagcccacag
acccgggagtctttgtcttgttggaatcctgattctataggctttaacctcatagaaaat
gttctatcacatatttgtagaaaagagagagctggtgctatcctggtatttatgactggg
tgggatgacataaatgctctgaaggagcagctccaatctcatccttttttgggagatcca
agcagagttctgttgcttgcttgccacggttccatgcccagcgcagagcagaggttaata
tttgaaaagcctgaagatggtgtgaggaaaatagtgcttgctaccaacatggctgagaca
agtatcaccattaatgatgtggtttttgttgttgattgtggaaaagcgaaagagacatca
tatgatgcgttgaataacacaccatgtttgctgccttcatggatttctaaagctgctgtt
cgacaaagaagaggaagagctggtcgtgttcaacctggagagtgttaccatctttatccc
agatgtgtgtatgatgcttttgcagattatcaattgccagaactcttaagaacacctttg
caatcactttgtctgcaaatcaaaagtttacaacttggaagcatttctgagttcctttct
agggctttgcagtctccggaactactatcggtccaaaatgctattgagtatttgaaaatc
attggtgctctagatgaaaatgagaatctgactatcttaggacggcacttgacaatgcat
ccggtggaacccaagcttgggaagatgcttatatatggggctatattcaactgcttagat
ccgatactaactgttgttgctggtcttagcgtgagggatccatttttaatgccatttgac
aaaaaggagcttgcagaggctgcacgagcccagttttctgctcaggattacagtgaccat
cttgctcttgttcgagcctatgagggttggaaagatgctgaaagagagcaatctggatac
gagtactgctggaagaattttctctctgcacagacactaaaagctattgattcccttagg
agacagttcttttctttgctcaaagatactggtctggttgattacaacacggacaattgt
aatgcatggagccacgatgagcacctcatccgagcagtcatctgtgcaggtttatttcct
gggatctgttcagttgtgaacaaggaaaaatctatatcattgaagacaatggaggatggt
caggtccttctatactcgaacacggtcaatgcccgagaatcaaaaattccatatccatgg
ctagttttcaatgagaaggtgaaagtaaactcaattttcctacgagattcgacagctgta
tcagattcgctggttctcctctttgggggaaacatctctagagggggacttgatggacac
ctgaaaatgttgggaggctacttggagttcttcatgaaacctgcattagctgatacatat
ctaaacctgaagagagaacttgatgaacttgttcaaaataaacttctgaatcccaagatg
gacattcgcacgcatgaggaactgttatcagcagtgcggtcgctgatttcagaggaccga
tgtgaaggaaggtttgtctttggccgtcagcccccgacaccatcaaaaactgcatcattg
tcaccaccacagaagttttcaaggagtcgcaatgggcctggaggtgataattccaagagc
cagctgcagacattgttaacccgggctggtcatgaagcacctacttataagacaaaacaa
cttcagaacaaccaatttcaaaccactgtggagtttaatgggatgcagtttatggggcag
ccttgtcagaacaagaagcttgcagagaaggatgctgcagctgagactttggaatggttg
acgggtgggactcaatcgagtcgagaagacattgacaatatgtcaatgctgctgaagaaa
agcaagaacaaacatcacaggagaacgtaa
DBGET
integrated database retrieval system
