Telopea speciosissima (New South Wales waratah): 122651499
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Entry
122651499 CDS
T07910
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122651499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122651499
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122651499
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_14
TPR_12
TPR_19
TPR_MalT
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
122651499
NCBI-ProteinID:
XP_043700839
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Position
2:62002653..62038565
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AA seq
848 aa
AA seq
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MDSRDLSSSAAASREGSSADEDGLLSVTAGLAKEAALLFQSRRYTECIDVLNQLLQKKED
DPKVIHNIAVVEYFRDGCFDPRKLLEVLNKVKRRSEELACASGEQVEVSGSVGNNVVSGP
KGSTVTPHQFLAANSSSIAYTDEFDTSVATLNIAVILFHLHEYANALSVLEPLYQNIEPI
DETTALHICLLLLDVALASHDASKAADVIQYLEKAFGVGYMINQGDNGSTNQHQSSNVVV
KPSSAPCNSTPPDASNSDSAANTNASENQLARSLSDEALESLLSTLDSGGQNLARPAGLP
SNDLLRTAADRPAHAVDLKLKLHLYKVQLLLLSRNYKATKREVKLAMNIARGRDSSMALL
LKSQLEYARGNHRKAIKLLMTSSNRTESGMPGIFNNNLGCIYHQLKKHHASTVLFSKGLR
SGSSLRSEKPLKLSTFSQDKSLLIVYNCGLQYLSCGKPIIAARCFEKASLVFHNQPLFWL
RIAECCLLALEKGLLNSNGSPASGEEVRVHVVGNGKWRQLLVEDGTLRNRYLDPMEEEGL
LGGDGQHMLSIPFARQCLFNALCLLNSLELKYLKVSMSNSGSEEDESSLSGSLENSNNKN
VSVGDSKASNFTLVSASANANGDAKEAKGVSPNNTLQSSVSAYEDMCRRENHLIKQAVLG
DLAYIELNLRNPLKALSAANSLLRIPECSRIYIFLAHTYAAEALCHLNRAKEAADHLSVY
ISDGNVEFPFSEDDKKWRVERGGDGEELNGASVAGSNTPIEDSQGIVFLEPEEARGTLYV
NLAAMSAMQGDLEQAQRFATEALSQMPNHPQAVITAVYVDLLLEKKEAALAKLKQYNHVR
FIPSNVTF
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggactcccgagatttatcgtcttcagccgctgcaagtagagaaggttcctcggcggat
gaagatggcctactctccgttactgccggccttgctaaggaggcggctttgttgtttcag
tcgcggaggtatacggaatgcatcgatgtgttgaatcagctcctacagaagaaagaagac
gatccaaaggttattcataatattgctgttgtggagtactttcgtgatggttgttttgat
ccaaggaagctacttgaagtgcttaataaagttaagagaagaagtgaagagcttgcttgt
gcatcaggagagcaagtggaagtttctggcagtgttggtaataatgttgtttcagggcct
aaaggaagcactgtgacaccacatcaatttttggctgcaaacagttccagtattgcctac
acagatgaatttgacacttctgttgctaccttgaacatcgctgttatcttgttccatctt
catgaatatgcaaatgcactatcagttctggaaccgttatatcagaatatagaacccata
gatgagacaacggctcttcacatatgccttctgttactggatgttgctctagcttcacat
gatgcatcaaaagctgcagatgttattcagtatctggagaaagcttttggagtaggttat
atgattaatcaaggtgacaatggaagcaccaaccagcatcaatcttcaaatgtggtagta
aaaccttcatctgcaccatgcaattcaactcccccggatgcttctaattcagactctgct
gccaatacaaatgcctctgaaaatcaattagcaagatccttatcagatgaagcacttgaa
tcccttctgtcaacactagacagtggtgggcaaaacttggcaagaccagctggcctcccg
tcaaacgatctgttgagaacagcagctgatcggcccgctcatgctgttgatctgaagctc
aagctccatctctacaaggtgcaactcctgcttctctctaggaactataaagcaacaaag
cgtgaagttaagctagctatgaatattgcacgtggtagagattcttccatggcattgctt
ttaaaatcccagctagagtatgctcggggtaatcaccgtaaggccatcaagctcttgatg
acgtcaagtaataggacagaatctggaatgccaggcatattcaacaacaatcttggttgc
atctatcatcaactaaagaaacatcacgcatcaactgtgctcttctctaagggattgaga
agtggctcatctctccgatcagagaaacctcttaagctttcaactttctcccaggataaa
tctctcctcatcgtgtataactgtggactgcaatacttgtcctgtggaaaaccaataatt
gctgctcgttgttttgagaaggccagtttagttttccacaatcagcccctcttttggctc
cgaattgctgaatgttgtctattggctctagagaaagggcttctgaactccaatggatct
ccggccagtggggaagaagttagagtccatgttgttggcaatgggaaatggaggcaactt
cttgtggaagatgggacattaagaaacagatacttggatcctatggaagaggaaggattg
ttgggtggtgatggccaacacatgctttcgatcccttttgctcggcaatgtcttttcaat
gccctgtgtttattgaacagtttggagttgaagtacttaaaggttagtatgtccaattct
ggttcagaagaagacgagtcaagtctatcaggatcacttgagaactcgaacaacaaaaat
gtgtcggttggtgattccaaggcatcaaatttcacactggtttcagcctcggctaatgca
aatggggatgcaaaagaggcaaagggagtgagccccaacaacaccctacagagttccgtc
tccgcttatgaggatatgtgcagaagggagaaccacttaatcaaacaggctgttctaggt
gacctggcatatatagagttgaatttgagaaacccattgaaggcactatcagctgcaaat
tctcttctgagaattccagaatgttcaaggatatacatctttctagctcatacgtatgca
gctgaggcactgtgccatctgaaccgtgctaaggaagcagctgatcatttgtcagtttac
atatcagatgggaatgttgagtttccattcagcgaagatgacaaaaagtggcgggttgaa
aggggtggagatggtgaagagttaaatggtgcttcagttgctggcagtaatacacccata
gaagattctcaaggtatcgtgttcctcgagcctgaagaggcacgtggaaccctgtatgta
aatcttgcagcgatgtctgcaatgcagggagatcttgagcaggctcaacggtttgcaaca
gaagctttgtcccagatgcctaaccatccacaggcagtcatcactgcagtttatgtggat
cttctgctggagaagaaagaagcagcccttgccaaattgaaacagtacaatcatgttaga
ttcatccctagcaatgtaacattttaa
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