Telopea speciosissima (New South Wales waratah): 122651547
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Entry
122651547 CDS
T07910
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122651547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122651547
03012 Translation factors [BR:
tss03012
]
122651547
Enzymes [BR:
tss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122651547
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122651547
Translation factors [BR:
tss03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122651547
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
ATPase
AAA_19
T2SSE
AAA_16
ABC_tran
PhoH
AAA_23
Motif
Other DBs
NCBI-GeneID:
122651547
NCBI-ProteinID:
XP_043700899
LinkDB
All DBs
Position
2:45885382..45924567
Genome browser
AA seq
1162 aa
AA seq
DB search
MHSGLRFLMVFGKSVSSLSGRRFTSKDDALFSLLRASISCGGGCKIGSRIWSNYLVTGQQ
CFCGYAVEQFSDDEYDCDFDNQKMSSSVANIDEWKWKLSLLLRSEKDQEIISRDKRDRRD
YEQISNLARRMGLYSQLYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLFQ
EHLDRIKLNSGKVSDNSVDAKVIDQIEDVNQDDNLDALLDGSLMEKVLQRRSWRMRNMQR
AWQESPEGKKMLDFRKSLPSYKEKERLLSAIARNQVVVISGETGCGKTTQLPQYILESEI
ESGRGAFCSIICTQPRRISAMAVSERVSTERGEPLGESVGYKVRLEGMKGKNTHLLFCTS
GILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAE
LFSKFFGGAPTIHIPGFTYPVRAHFLEDVLEITGYKMTSFNQIDDYGQDKLWKTQRQLLP
RKRKNQITALVEDALNKSSFENYSSRVRDSLSSWSPDCIGFNLIEAVLCHICRKERPGAV
LVFMTGWEDISCLRDQLKAHPLLGDPNRILLLTCHGSMATSEQKLIFEKSPPNIRKIVLA
TNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGE
CYHLYPRCVYEAFSEYQLPELLRTPLNSLCLQIKCLQLGTVGDFLSAALQPPESLAVQNA
VDFLKMIGALDEKENLTNLGEFLAMLPVDPKLGKMLIMGAIFRCFDPILTIVAGLSVRDP
FLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLK
AIHSLRKQFNFILKEAGLLDADASSNNSLSHNQSLVRAIICSGLFPGIASVVHRETSMSF
KTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNTVFVRDSTGVSDSTLILFGGSLSP
GVSAGHLKMLDGYIDFFMDPSLADCYWNLKEEFYKLLHKKLQDPSLDIHKEGKYLMLAVQ
ELVASDQCEGRFVFGRESRKARVVSDDGNSSNSFCKDGTNPKSLLQTLLTRAGHSPPKYK
TKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNNNRDEDDNSPP
DITDNMLKLLGKRRTSKRCSGR
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgcactccggattaaggttccttatggtatttggcaagtcggtgtcgtctctttccggt
cgcaggttcacgagcaaagatgatgctctgttttcattactgcgagcttcgatttcatgt
ggcggaggctgcaaaattgggagcagaatttggtcgaactacttggttacaggacagcag
tgtttctgcggatacgcggtggaacagttttcagacgatgaatacgattgtgatttcgat
aatcagaagatgtcttcctccgtggccaacattgatgaatggaaatggaaactcagcctg
cttttacgcagtgaaaaagaccaagaaataatttctagagataaaagagataggagagac
tacgagcagatttctaaccttgcaagaaggatgggcctttacagtcaactctatggaaaa
gtagtggttgcaagcaaggttcctcttccaaattacaggccagatcttgatgacaaacga
ccgcagagagaggtggttatacctctcagcttgcaaaggagagttgagggtctatttcag
gagcaccttgatagaataaagctaaactctggaaaggtcagcgacaattcagttgatgct
aaggtcattgatcagattgaagatgtgaatcaggatgacaacctagatgctttgcttgat
gggtcactgatggaaaaggttcttcagaggaggagttggcgaatgcgtaatatgcagaga
gcttggcaggaatcacccgagggaaagaagatgctggactttaggaaatctcttccttcg
tacaaggagaaggaaagactgctttctgcaattgcaagaaatcaggttgtagtgatttca
ggggagactggctgtggcaaaaccactcaacttcctcaatacatattggagtcagaaata
gaatctggccgtggcgcattctgtagcatcatctgtactcagccccgaagaatatctgca
atggctgtttccgagagagtttcaacagaaagaggagagcctcttggtgaatctgttggt
tacaaagttcgattagagggaatgaaaggcaaaaatacgcatctcctgttctgtaccagt
ggtattttactaaggaggttgctttctgaccgcaatctcaatggtataacccatgttttc
gttgatgaaattcatgaaagaggcatgaacgaagatttcctattgatcgttttgaaggat
cttcttccacgccgtcgagatttgagattgattttaatgagtgctactctgaatgcggag
ctgttttcaaaattttttggtggggcaccaactattcacatcccgggcttcacttaccca
gtacgtgcacactttctggaagatgtattggagataacgggttataagatgacctcgttc
aatcaaattgatgattatggccaagataagttgtggaaaacacagaggcagctattgccg
cgaaaaaggaaaaaccagatcactgcacttgttgaggatgctcttaataagtctagcttt
gagaattatagttcgagggtacgggattctctgtcatcttggtcacctgattgcatagga
tttaatcttattgaggcagttttatgccatatatgccgcaaggaacgacctggtgctgtg
ttagtatttatgactggctgggaggatattagttgtttgcgagatcaacttaaggctcat
cccctcttaggagatccaaacaggatactactgcttacatgccatggttcaatggccacg
tctgaacagaaactcatatttgagaaatcacctccaaacattcgtaagatagttcttgct
acaaacatggctgaggcaagcataaccatcaatgatgtagtttttgtggttgattgtgga
aaagcgaaagaaaccacatatgatgctttgaacaatacaccttgtttattgccttcatgg
atatcaaaagcatctgcccgacaaagaagaggtagagctggacgtgtgcagccaggagag
tgctatcatctgtatcccagatgtgtatatgaagctttttctgaatatcaacttcctgaa
cttttgagaactcctttgaattctctatgtttgcaaataaaatgtttgcagcttggaact
gtaggggatttcttatcagctgctctgcagcctccggaatcactggctgtccaaaatgca
gttgactttttaaaaatgattggagctttagatgagaaggagaatctgacaaaccttgga
gagtttctagcaatgcttccagtggatccaaagcttggaaagatgcttatcatgggtgcc
atctttcgttgttttgatcctattcttacaatagtggctggacttagtgttagggatccc
tttttgttgcctcaagacaagaaggatctagcagggacagcaaagtcaagattctctgca
aaagactacagtgatcatatggctcttgtccgtgcttatgaaggatggaaagatgcagaa
agagaagggtcggcttatgaatattgctggcgaaacttcctctctgctcagactcttaag
gctatccattctctcaggaagcaatttaactttattttaaaggaagctggtttattagat
gcagatgccagcagcaataatagtttaagccacaatcagtcgctggttcgtgctattatc
tgttctggtctttttcccggtatagcttctgttgtgcacagagagacttctatgtctttc
aaaacgatggatgatggtcaagttctactatatgcaaactctgtgaacgcacgatatcaa
acaatcccatacccttggttggtctttggagagaaagttaaggtcaatactgtttttgta
cgtgattccactggcgtatctgattcaacactaatcctttttggcggttctcttagccct
ggggtttcggctggacatttgaaaatgttggatggttatatcgatttcttcatggatcct
agtttggcagattgctattggaacctcaaggaggaattttacaagctcctccacaagaag
cttcaagatccaagccttgacatacacaaggaaggcaagtacctcatgcttgctgtgcag
gagctggttgcatcagatcaatgtgaaggtaggtttgtatttggccgtgaaagcaggaaa
gctagggttgttagtgatgatggaaatagcagcaacagcttttgcaaggatggaacaaac
cctaagagcttgcttcaaacactgctgacgagagctggtcacagccctcccaaatacaaa
acaaaacacctaaagacaaatgaattcagggccctggtggaattcaaagggatgcaattt
gttgggaagcccaagagaaacaagcagcttgcagagagagatgctgccatagaggcattg
gcatggttgacacacacctcggacaacaacaacagggatgaagatgacaattcccctcct
gacatcactgacaacatgcttaaactgttggggaaacgcaggacatcaaagcgttgctct
ggtcgatga
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