Telopea speciosissima (New South Wales waratah): 122651636
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Entry
122651636 CDS
T07910
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122651636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122651636
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
122651636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
RRP7
Motif
Other DBs
NCBI-GeneID:
122651636
NCBI-ProteinID:
XP_043701040
LinkDB
All DBs
Position
2:46371749..46398817
Genome browser
AA seq
945 aa
AA seq
DB search
MEIDSVPEETLKQKAETLQALANGPLASSLSKLSVSSRGIPSDKDFHFFRNFDEFKVPMK
EIAEKSESLLKSIGSSSFLLGKEMTFPKDSEEAYEWLVNVSDEVIERCDVSMDEFSRLRK
KEEDVGERNSSISSEDGFQLVYGKKKKVGSHSMETEKGQDSCPVTSVKVASRDKKTTGAK
PRVPFHIPSIVRPQDEHKIMVNNSNQPFEHVWLKRSGDGSRFIHPLEEFSVYDFVDRNIG
DVEPVKPLPIESTPFKLIEEVKDLKELAAKLQNVDEFAVDLEHNQYRSFQGMTCLMQIST
RSEDYVVDTLKLRVLIGPHLRELFKDPSKKKVMHGADRDILWLQRDFGIYVCNLFDTGQA
SRVLQLERNSLEYLLHHFCGVTANKEYQNADWRLRLLPDEMLRYAREDTHYLLHIYDLMR
ARLLSARAESESGDDLLLEVYRRSYEICMQLYEKELLTDTSYLYIYGLGGADFNAQQLAI
VAGLCEWRDAVARAEDESTGYILPNKALLDIARHIPLNAGKLRRLVRSKHPYVERNLSSV
LIIIENSIQNAAAFENAAEQLKKGRQETESDENVKVIADESEALPTMGIPTRMLTAAAET
MNTNDDYDNSVNGKIGECIAAPVQLKEEPLELVGNAFESGTSGKGGSFELPGEAGKIKNE
QDFVLKPPTGSPALLAQMGDTNIEMSSRTSAKPVTGATIQMLKKPSRAFGALLGNSTSKR
KLNPEQKDNAEMKVEKIKSSVNLPFHSFSGSDKQMKPFFQECKKPVEIHPSEPVVTLAEA
NNLEDIISLECGLDDEKSADGVPKAANDALHPMENDNDIGSTLEPDTGDEPTSLSDLSSS
FQKCFQSINHNKNNGQVQSSREYEGLQLKPFDYAAARNELKFGEGKEAEGEGKSDEGRRG
LVGSKERRKSSAANSGPIDEGANDNQQPRRRQAFPVTGNRSATFR
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atggagattgattcggtaccggaggagactttgaaacaaaaagctgaaacattgcaagcg
ttggctaatggtcctttggcatcttctctttcgaagctttccgtttcttctagaggtatt
ccttcagacaaagacttccatttctttcgcaacttcgacgaattcaaagttcctatgaaa
gaaatcgctgagaaatctgaatcgctgttgaaaagtattggttcatcaagttttctattg
gggaaggagatgacttttcctaaagattcagaagaagcttacgagtggctggttaatgtt
agtgacgaggtcattgaaagatgtgatgtttccatggatgaatttagcaggctgaggaag
aaagaagaggatgtaggggaacgtaatagttcgataagctctgaagatgggtttcagttg
gtttacgggaaaaagaagaaagtaggtagtcacagtatggagactgagaagggacaagat
tcgtgtcctgtgacgtcagttaaggtggcttcaagggataagaaaacaacaggggcaaag
ccacgcgtgccattccatataccatcgattgttcgaccccaagacgaacataaaataatg
gttaataactcgaaccagccgttcgagcacgtttggctgaagaggagtggggacgggagc
agatttatacatcctttggaggagttctctgtgtatgattttgttgatagaaacattggg
gatgtggaaccagtaaaaccgctccctatagagagtaccccttttaagctcattgaagaa
gtcaaggatttgaaggagttggctgccaagttgcaaaatgtggatgagtttgcagttgat
ttggagcataatcaatatcgttcctttcaaggaatgacgtgcttgatgcaaatttctact
agaagtgaagactatgtagttgatacgctaaaacttcgggtactcattggtccacatctc
agggaattgtttaaagacccctcgaagaagaaggttatgcatggggcggatcgtgatata
ctgtggcttcaacgggactttggcatatatgtctgcaacttgtttgacactggacaggcg
tctagggtgttgcaattagagaggaacagtttggagtatctcctgcatcatttttgtgga
gtcactgcaaacaaggaataccaaaatgcagattggagactgcgcctgcttcctgatgag
atgcttagatacgcaagagaagatacccattatctattgcatatatatgatcttatgaga
gccagattgctttcagcacgtgcagaatctgaaagtggtgatgatcttctcttagaggtt
tacagacgcagttatgaaatatgcatgcagctttatgagaaagaacttttgacagatact
tcatatctctacatatatgggttagggggggctgatttcaatgcgcagcaactggctatt
gttgcagggctttgtgaatggagagatgctgttgcccgtgcagaggacgaaagcactggc
tatatattgccaaacaaagctttacttgacattgctaggcatattcccctcaatgctgga
aagctgaggcgtctagttagatcgaaacatccttacgttgagcgcaatcttagttctgta
ctcatcatcattgagaattcaatccaaaatgctgctgcttttgaaaatgcagctgagcaa
ctaaagaagggccgccaagaaacagaatcagatgaaaatgtgaaagtgatagctgatgaa
tctgaagccttaccaactatggggatccctacaagaatgctgactgcagctgctgaaaca
atgaacacaaatgatgattatgataattcagtaaatgggaagataggtgaatgcatagca
gcaccggtccagctcaaggaagagcctttagaacttgtgggaaatgcttttgaaagtggt
acatctggaaaaggaggctcctttgaactacctggtgaggctgggaaaatcaagaatgaa
caggattttgtgttaaagcctccaacgggaagccctgctcttttagcacaaatgggtgac
acaaatattgagatgagctctagaacttctgcaaaacctgttactggagccaccatccaa
atgctgaagaagccaagcagagcttttggagcacttttggggaattcaacctcgaagaga
aagcttaatccagaacaaaaagacaatgcagagatgaaggtggagaagatcaagtcatca
gtaaaccttccattccactcgttttcaggcagtgacaagcagatgaaaccatttttccag
gaatgcaagaaacccgtggaaattcatccctctgaacctgttgtcacactagctgaggcc
aacaatttagaagatattatatcattggagtgtggcttagacgacgagaaatcagcagat
ggtgtaccaaaagctgctaatgatgctttgcatcctatggaaaatgacaatgacataggt
tccactttggaaccagatacaggggatgaacccacgtctctgtctgatttatcatccagc
ttccagaagtgcttccagtccataaatcataacaagaacaacgggcaggtccaaagctct
cgtgaatatgaaggtttgcagttgaagccatttgattatgctgcagcaaggaatgagctg
aaatttggggagggcaaggaggcagagggagaagggaagagtgatgaaggccggagaggt
ctggttggctcaaaggaaagacgcaaaagttcagctgccaatagtggcccaatagatgag
ggagctaatgataatcagcaacctagacgacgccaggctttcccagtcacagggaatcga
agtgcaactttccgttga
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