Telopea speciosissima (New South Wales waratah): 122651780
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Entry
122651780 CDS
T07910
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122651780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tss03021
]
122651780
03036 Chromosome and associated proteins [BR:
tss03036
]
122651780
Transcription machinery [BR:
tss03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
122651780
Coactivators
SAGA/TFTC/STAGA complex
122651780
Chromosome and associated proteins [BR:
tss03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
122651780
STAGA complex
122651780
TFTC complex
122651780
SAGA complex
122651780
SLIK complex
122651780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_EIPR1
Ge1_WD40
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
LisH_PAC1
Cytochrom_D1
WD40_like
Motif
Other DBs
NCBI-GeneID:
122651780
NCBI-ProteinID:
XP_043701246
LinkDB
All DBs
Position
2:complement(58840353..58906013)
Genome browser
AA seq
680 aa
AA seq
DB search
MPIFFDSLGREMEEEEIEKAVIAYLKKRGFKQTELALQEEQSKRSSAAASQTDPEVAKKI
LTFSEPENGPMQYHEGYNKLRSWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHTQEAR
TFFNSFREDHELMHLRDLQKLEGVLSPLHLEEMEFAHSLRQSKINIKMCQYSYELLLQYL
QKTQSITILGIINEHINFQVSPGQPSSISDDADVVTLVGSSHDTAKQINQQEIRWGLLED
SLEDRLEKAGGLMSDSEKGEGESKEGDLEENKKRSVDGGKQGALVKKLKKDKVVGATGKT
IRSETNTVSIAPRVKPELTLPVMPTEVEHSILEDLRNRVLLGSLALPSVSFYTFINTHNG
LNCSSISHDGSLVAGGFSDSSLKVWDMSKIGKQTDTSTVQGENESTPSENLLGTEDGKRS
YALFQGHAGPVYSAAFSPLGDFLLSSSADSTIRLWSTQLNANLVCYKGHNYPVWDVQFSP
VGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHVNCNYVATGSSDKTVRLWD
VQSGECVRIFIGHRSMVLSLAMSPDGRYMASGDEDGMIMMWDLSSGRCVTPLIGHTSCVW
TLAFSCEGSLLASGSADCTVKLWDVTASTKTPRTEENKAGSTNRLRSLKTLPTKSTPVYS
LRFSRRNLLFAAGVLSKAYN
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgcccattttctttgattctcttggcagggaaatggaggaagaagaaatcgagaaagct
gtgattgcgtatcttaagaagaggggctttaagcaaacagagcttgccctccaggaagag
caaagtaagaggtcctctgctgctgcttcacagactgatcctgaagttgccaagaagatc
cttactttttctgaaccagagaatggtccaatgcagtaccacgagggatataataaatta
cggtcatggacatatagttctttggatttgtacaagcatgagttacttcgtgtgctctat
ccagtatttatccattgtttcatggatcttgtggcaaaagggcacacccaggaagctaga
acgttcttcaatagcttccgcgaagaccatgaactgatgcatttacgagaccttcaaaag
ctggaaggcgttctttcgcccttgcatctggaggagatggaatttgcacattctctgagg
cagagcaaaatcaacataaagatgtgtcagtactcgtacgaacttctgctgcaatatcta
cagaaaacacaatcgattacaatactcggaattatcaatgaacacatcaattttcaggtt
tctcctggccagcccagttcaatttccgatgatgctgatgtggtaactctggttgggagc
agccatgatactgctaagcagattaatcagcaagaaattcgttgggggttgctagaagat
tctttggaagatcgtttggagaaggctgggggtttaatgtcagactctgaaaagggtgaa
ggagaaagcaaagagggggacttagaagagaataagaagagatcagtggatggaggaaaa
caaggtgctttagtcaagaagttgaaaaaagacaaggtggttggtgccacagggaaaacc
attcgttctgagacaaacacagtgtccatagctccccgcgtaaagccagagcttacttta
cccgtaatgccaacagaagtagaacattctattcttgaagacctcagaaaccgtgtactg
ttgggaagtttggcccttccatctgttagcttttatacattcattaacacacataatggt
ttgaactgttcttcaatatcacatgatggatccttagttgctggtggattctcagactcg
tcgctcaaggtttgggacatgtcgaagattggaaaacaaacagacacttctactgtgcag
ggagaaaatgaatcaactcctagtgagaatttgctgggaacagaagatgggaaaagatcc
tatgcattgtttcagggtcatgctggacctgtttattcagctgcatttagtcctcttggg
gattttcttctatcctcttcagctgactcaaccattcggttgtggagtacgcagttgaat
gcaaatcttgtttgctataaaggtcataattaccctgtgtgggatgttcagtttagtcct
gttgggcattattttgcgagctcttcacatgatcggactgctaggatttggtccatggac
agaatacagcctctaagaatcatggcaggacatttatctgatgtcgattgtgtgcaatgg
catgtgaactgtaactatgtcgcaactggatcaagtgacaagactgtaagattgtgggat
gtgcagagtggagagtgtgttcgcattttcattggtcaccggagtatggtcctatctttg
gcaatgtcacctgatgggcggtacatggcatcaggtgatgaagatgggatgatcatgatg
tgggatctttcaagtggtcgttgtgtcacacctttgatagggcacacatcatgtgtatgg
acgcttgcttttagttgtgaaggttcgcttttggcttctgggtctgctgattgtactgtg
aaattatgggatgtgacagcaagcaccaagacaccgagaacagaagagaacaaagcagga
agcacgaatagactaagatcattgaagactctcccaaccaagtcgactccagtttactct
ttgcggttttctcgaagaaatcttctgtttgctgctggagtgctgtcaaaagcgtataat
tga
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