Telopea speciosissima (New South Wales waratah): 122651865
Help
Entry
122651865 CDS
T07910
Name
(RefSeq) protein VACUOLELESS1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
122651865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tss04131
]
122651865
Membrane trafficking [BR:
tss04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
122651865
Hops complex
122651865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
WD40_WDHD1_1st
WDR55
Motif
Other DBs
NCBI-GeneID:
122651865
NCBI-ProteinID:
XP_043701360
LinkDB
All DBs
Position
2:complement(77194866..77209241)
Genome browser
AA seq
841 aa
AA seq
DB search
MAAVSVAAEWQLLYNRYYRKPEIYTMQWKHMDLNRNKVACAPFGGPVAVIRDDSKIVQLY
AESALRKLRIFNCAGVQLSETVWKNPGGRLVGMAWTDDQNLVCVVQDGTVYRYNIHAELQ
EPNISMGKECFEQNVVECVFWGNGMVCITEGFQIFCIPDFNNPKPCKLAETAIEELPLCM
AVIEPQYTMSGNVEVLLAVNDHVLLVEEESVQQLGDGVGPLQKMVVSRNGKLLASFTHDG
RLLVISTDFSKIIFEHNCESALPPEQLAWCGMDSVLLYWDDMLLMVGPYGDPVRYLYDEP
IILIPECDGVRILTNTSMEFLQRVPDSTVSIFKIGSTLPAALLYDALDHFDRRSAKADEN
LRLIRSSLPEAVEACIDAAGHEFDVSRQRTLLRAASYGQAFCSNYQRDRFQEMCKTLRVL
NAARNYEIGIPLSIQQYKLLTPAVLIGRLINAHRHLLALRISEYLGLNQEVVIMHWACAK
ITSSLPIHDAALLEILLDKLKLCKVISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPL
LLSIGEEDIALSKATDSGDTDLVYLVLFHIWQKKLPLEFFSMIQARPVAHDLFITYARCY
KHEFLKDFFLSTGQLQDVAFLLWKESWELIKNPMASKGSPLQGPRIKLIEKAQSLFAETK
EHTFESKAAEEHAKLLRIQHELEVTTKQAIFVDSSISDTIRTCIVLGNHRAATKVRTEFK
VSEKRWYWLKVFALATIRDWDALEKFSKEKRPPIGYRPFVEACIDADEKAEALKYIPKLT
DPRERAESYARIGMAKEAADAASQTKDGELLGRLKLTFAQNTAASSIFDTLRDRLSFQGV
S
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtgtcagtagctgcagaatggcagctcctctacaaccgctactaccgcaaa
cccgagatctacacaatgcagtggaagcatatggatctcaatcgcaacaaggtagcgtgc
gctccctttgggggacccgtcgcagtcatccgcgacgactccaagatcgttcaattatac
gcagaatcagcccttcgtaagcttcgtatcttcaattgcgctggagttcagctctccgag
accgtttggaagaacccaggtggacgtctcgtgggcatggcatggaccgatgatcagaat
ttagtctgtgtcgttcaggacggtacagtgtaccgttacaacatccacgcagagctccaa
gaaccaaacatctcgatgggtaaggagtgtttcgagcaaaatgtggttgagtgcgtgttt
tgggggaatggaatggtttgtatcactgaagggttccagattttctgtattcctgatttc
aataatccaaagccatgtaagcttgctgagacggcaattgaagagttgccgctttgtatg
gcggtgattgagccacagtatacgatgtcggggaatgtggaggttcttcttgcggttaat
gatcatgttttgcttgttgaagaggaatcggttcagcagcttggagatggggtgggtccg
ttgcagaaaatggttgtgtcacggaatggtaagttgcttgcttcgtttacgcacgatggg
cgacttctggtcatctctactgacttctcaaagataatttttgagcataattgcgagtca
gccttgcctccagaacagttagcttggtgtggaatggacagtgtgctactttattgggat
gatatgcttttgatggtgggtccttacggagatcctgtacgctatctgtatgatgaacct
attattcttatcccagagtgtgatggagtgaggatccttacaaatacaagtatggaattc
ttacaacgagttccagattctaccgtgtccatatttaagattggaagtacactacctgca
gctttattatatgacgcattggatcactttgacagacgtagtgccaaggcagatgaaaat
ttgcgtttgattcgatcctccttgcctgaggcagttgaagcatgtattgatgctgcaggt
catgaatttgatgtctctcgccagcgaactctattaagagctgctagctatggccaagca
ttttgcagcaattatcaacgtgatcggtttcaagagatgtgcaaaacattacgagtgcta
aatgctgcgcgcaactatgagattggtattccccttagcattcagcaatacaagttgctt
actccagcagttctgattggtcgtttaataaatgctcaccgacaccttcttgcgctgcgt
atatctgagtatcttggccttaaccaggaggtggtaataatgcactgggcatgtgcaaaa
ataacatcttccttacctattcatgatgctgctcttcttgaaatcttacttgataagctg
aaactatgcaaagtgatatcatatgcagcggttgctgcacatgcagataagagtggacgt
cgaaaattagctgcaatgcttgttgaacatgaaccacgttcttccaaacaggtcccatta
ttgttgagcataggtgaggaagacatagctttaagcaaggctactgacagtggcgacact
gaccttgtgtatcttgttctttttcatatctggcagaagaagctccccctggaatttttc
agtatgattcaagcgaggcctgtagctcatgatctctttatcacatatgcacggtgttat
aagcatgaattcctgaaggatttcttcctctcaactggacagcttcaagatgtggctttt
ctattgtggaaagagtcgtgggaactaataaaaaatccaatggcaagtaagggatctcca
cttcaaggtccacgcataaagttaattgagaaggctcaaagtctctttgcagagaccaag
gagcacacatttgaatcaaaagctgctgaagagcatgcaaaactgctcagaattcaacat
gaattagaagtgaccacaaaacaggccatatttgttgattcaagtatcagtgatacaatc
cgcacctgtattgttctgggaaaccatcgagctgcaacgaaagtcagaacagaatttaag
gtttctgagaagaggtggtattggctcaaagtatttgctttggctacaatcagagactgg
gatgcgctagagaaattttcaaaggaaaaaagaccacctattggttataggccatttgtg
gaggcgtgtattgatgcagatgagaaagctgaagctcttaaatacatcccaaaactcaca
gatcctcgagaaagggctgagtcatatgcacgcattggcatggcaaaggaagctgcggat
gctgcatctcagacaaaagatggtgaattgcttggtcgactgaagctaacctttgctcag
aatacagcagcttcatcaatttttgataccttgcgagatcgattgtccttccaaggagtt
tcttag
DBGET
integrated database retrieval system
