Telopea speciosissima (New South Wales waratah): 122651973
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Entry
122651973 CDS
T07910
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a isoform X1
KO
K10695
E3 ubiquitin-protein ligase RNF1/2 [EC:
2.3.2.27
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
122651973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tss04121
]
122651973
03036 Chromosome and associated proteins [BR:
tss03036
]
122651973
Enzymes [BR:
tss01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122651973
Ubiquitin system [BR:
tss04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122651973
Chromosome and associated proteins [BR:
tss03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
122651973
Noncanonical PRC1 (PRC1.1)
122651973
Noncanonical PRC1 (PRC1.3/1.5)
122651973
Noncanonical PRC1 (PRC1.6)
122651973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
zf-UDP
zf-RING_6
zf-RING_4
zf-Nse
Dicty_REP
ZNF512_C2HC
zf-rbx1
TRAF3_RING
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
122651973
NCBI-ProteinID:
XP_043701500
LinkDB
All DBs
Position
2:68906810..68921605
Genome browser
AA seq
482 aa
AA seq
DB search
MPAQKRSSENLEEESQQRHHHHQNNHIQAAVEEDGEDSDGSPSSSGGDKSEFVMVRLSDI
RKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPN
YDSLIAALYPDIDKYEEEELAFHEEERNRNKQIQASIAQTLKRQSEALGRRRTTAKATAA
AFVRKSQGNYRNSHSRTRRSGRSLELQGSDDDETNGNDGANDSSSDEHIEVKPKRCRRWA
GPRFSQPSAAAANADGGCDENDDLEVIRESTGASPGLIGNPEVLAWGKGGVRSHTRYGSV
SGNNGKNARTTRLSKLVDYLKSLDENEDQLDVHLTLIPLDKESIPSLQRPYLCCRPALSI
RHLCQFVALQTAVQADDVQILMVKEPHYTNADQCGSLFNSSTSKDDLILKSLVSPSKAEL
QLLEEQETLAELQANCTSCKGQLVSSPRNRCVLADFDFVVSCNHQPLLPVLFSGSGISEE
GR
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctcagaagcgttcatcggaaaatctcgaagaggaatcccagcaacgccatcat
caccaccagaacaaccacatacaagcagcagtagaagaagatggagaggattccgatgga
agcccttcgtctagtggcggagataaaagcgaatttgtaatggtgagattgtcagacata
cgcaaagaagtacaatgtccaatatgcctaggtatcattcggaaaacaagaactgtaatg
gaatgtctgcatcgcttttgcagggaatgcattgacaaatcaatgcgactggggaacaat
gaatgtcctgcttgccggacacattgtgcaagtcggcgttctttgagggacgatccaaat
tatgattctctaattgcagctttatatccagatattgacaagtatgaggaggaggaactg
gctttccatgaagaggagaggaatcggaacaagcagatccaagcatccattgcccagaca
ttaaaacggcaatcagaagcacttggtcggagacgcactacagctaaagccacagcagct
gcatttgtgaggaaatctcagggaaattatcggaactctcattcaagaacgagaagaagt
ggtcgtagtttggaacttcaaggatctgatgatgatgagacaaatggcaatgatggagcc
aatgattcatcttctgatgaacatatagaggtaaaacctaagaggtgcaggagatgggca
ggaccacggttctctcagccttctgctgcagctgccaatgcagatggaggctgtgatgaa
aatgatgatttggaagtgatcagagaaagcacaggtgcatcccctgggttgattggaaat
ccagaagtactggcttggggcaagggaggtgtgcggagtcacacacgatatggtagtgta
agcggtaataatggtaagaatgctcggactacccgcttatctaagttggtagattacctc
aaaagcttggatgaaaatgaagatcagttggatgtacatctcacacttatccctttggac
aaagaaagtataccaagtttgcagcggccatatctttgctgccgccctgcgttgtctata
agacacttatgccaatttgttgctctccagactgcagtgcaagctgacgacgtccaaata
ttgatggtgaaagagccccactatacaaacgctgaccagtgtgggtcgttgtttaattct
tcaacttccaaggatgatctgattctgaagtccctagttagtccttccaaagctgagctg
caattgttggaagagcaagaaaccctggcagaacttcaagctaattgtacctcctgcaag
ggccaactggtgagttcacccagaaatagatgtgttttagcagattttgactttgttgtg
tcttgcaatcatcagcctcttctgcctgtgctattttcaggttctggtatatcggaagaa
ggaaggtag
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