Telopea speciosissima (New South Wales waratah): 122652001
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Entry
122652001 CDS
T07910
Name
(RefSeq) polyadenylate-binding protein 7-like
KO
K13126
polyadenylate-binding protein
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03015
mRNA surveillance pathway
tss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122652001
09123 Folding, sorting and degradation
03018 RNA degradation
122652001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122652001
03041 Spliceosome [BR:
tss03041
]
122652001
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122652001
mRNA cycle factors
Stress granule specific factors
122652001
Spliceosome [BR:
tss03041
]
Complex C
Other components
Complex C specific factors
122652001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RBD_DEAH11
RRM_occluded
Nup35_RRM_2
RRM_5
RRM_3
Motif
Other DBs
NCBI-GeneID:
122652001
NCBI-ProteinID:
XP_043701551
LinkDB
All DBs
Position
2:complement(10606654..10610769)
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AA seq
637 aa
AA seq
DB search
MAVPSNVPAPASLYVGDLHLDITDGQLFDAFSVIDNLASVRVCRDSMSGRSLGYGYANFI
TTQDAIRAIEKLNHTPLNGKPIRIMWSHRDPDARKTGVGNLFVKNLNDSIDNVKLHEMFS
KFGNISSCKVVMSLDGKNQGYGFVQFESEASATAAVEKFNGSIIGGKQIYVGNFVKKSER
VLPSPDAKYTNLYMKNLDPDITEELLQEKFSEFGKITNLVISKDNNGNSRGFGFVNFDNP
DDAKQAMETMNGSQLGSKALYVARAQKKAEREQILHRQFVERRKEQIQKYKDSNIYVKNI
ADDVDDDELREHFSQCGTITSAKLMRDDKGISKGFGFVCFSTPEEANKAVNTLHGCMFRQ
KPLYVAIAQRKEDRRAQLQLQYAQRFTGLAGPSTAVIPSGYSPLYYTPPGVVSQIPPRQG
LVYQPLGLRPGWRANGFAPPARPAFQPMPLPVVPNIPRQNRQNRSRMNGHMLPQGGGQNM
QFVPHLRQPTQSVNSLKDSSNQQRAGQTKYVSNGQHPHEINNGSAVPSSASNSVGAASQG
SEMLSSMLAAATPQHQKQMLGERLYPLVKKHKYDLAAKITGMLLEMDNSELLLLLESPES
LAAKVEEAVQVLKLSKTKVAGQDALNPNYFSAQVTVI
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggctgttccttcgaacgtccctgcacctgcttcgctttatgttggagaccttcatctt
gatatcaccgatggacaactcttcgatgccttctctgtcatcgataaccttgcatctgtc
agggtttgcagagattccatgtctggaagatctctcggttacggttatgccaatttcatc
actacccaagacgcaatccgtgctatcgagaaactgaatcacactccgttgaatggcaaa
ccgattagaattatgtggtctcatcgtgatccggatgcaaggaagactggggtcgggaat
ttgtttgtcaagaacctgaatgattctattgataatgtgaaacttcatgagatgttctct
aagtttggaaacatatcatcctgcaaagttgtaatgtctctggatggaaagaaccaagga
tatgggtttgtacagttcgagtctgaagcatctgccactgctgctgttgagaagtttaat
ggttccattattggtggcaaacaaatatatgtgggtaattttgtcaaaaagagtgagcgg
gttttacccagccctgatgcaaaatacaccaatctgtacatgaagaatctggatccagat
attacagaagaacttttgcaggaaaagttctctgagttcggaaaaattactaatctggta
atctcgaaggacaacaatgggaactcaaggggttttggatttgtgaattttgataaccct
gatgatgctaaacaggcaatggagacaatgaatggatcacaacttggctcaaaggctttg
tatgtagcaagggcacaaaagaaagcagagcgagagcaaatattgcatcgtcagtttgtg
gaaagacgtaaggagcaaatccagaaatataaggattcaaacatctatgttaaaaacatt
gctgatgatgtcgatgatgacgaactgcgagaacactttagtcagtgtggtacaatcact
tctgcaaagctaatgcgtgatgataaaggaattagtaaggggtttgggtttgtatgcttc
tctactccagaagaagcaaacaaggctgtgaatactctgcatggatgcatgtttcgtcaa
aagcctttatatgtagctattgcccaaaggaaagaggacaggcgagcacaattgcaactt
caatatgcccagcgttttacgggattagctggtccctcaactgcagtcattccttctggt
tattctcctctttattacacacctcctggtgttgtatcacaaattcctccgaggcagggc
cttgtgtatcaacctttgggtttgagaccagggtggagggccaatggatttgcacctcca
gccagaccagcttttcaacctatgccactacctgtggttcctaatattccaagacagaat
aggcaaaataggagcaggatgaatggccatatgcttcctcaaggtggtggacaaaatatg
caatttgtgccacatttgcgacaacctacacaatcagtgaattcattgaaagattcaagt
aatcagcagcgtgctggacagaccaagtatgtgtcgaatgggcagcatccccatgagata
aacaatggatctgcagttccatcatctgcttctaactctgttggagctgcatcccaagga
tcagagatgttgagtagcatgcttgctgctgctacgcctcagcaccagaaacagatgctt
ggtgagcgcctctaccccctagtgaagaaacacaagtatgatctagcagctaaaataacc
gggatgcttttggagatggacaactctgaattactactgttattggaatcgccggagtcc
ttggctgctaaagtggaagaagcagtgcaggtgctgaagctatccaagaccaaagtagct
ggccaagatgctcttaatcccaattacttttcggctcaggtcactgtcatctga
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