KEGG   Telopea speciosissima (New South Wales waratah): 122652131
Entry
122652131         CDS       T07910                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
tss  Telopea speciosissima (New South Wales waratah)
Pathway
tss03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tss00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    122652131
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tss03019]
    122652131
Messenger RNA biogenesis [BR:tss03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     122652131
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_THOC3 WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WD40_Gbeta WDR55 Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st NBCH_WD40 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_SCAP WD40_RFWD3 Beta-prop_DCAF12 Beta-prop_SPT8 Beta-prop_WDR41 Beta-prop_VPS8 Beta-prop_WDR35_TULP_N Ge1_WD40 Beta-prop_IFT140_1st Cytochrom_D1 Beta-prop_WDR75_2nd Beta-prop_NUP159_NUP214 WDR54 CFAP43_N Beta-prop_WDR11_1st Tricorn_2nd DUF5711 Beta-prop_ACSF4 Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 122652131
NCBI-ProteinID: XP_043701738
LinkDB
Position
2:4109274..4132679
AA seq 321 aa
MKLAGLKSVENAHEESIWAATWVPATDTRPTLLLTGSLDETVKLWRPDELVLEGTNTGHC
LGVVSVAAHPSGVIAASASLDSFVRVFDVDTNATIATLEAPPSEVWQMQFDPKGTILAVA
GGGSASVKLWDTATWQLAATLTVPRPEGSNPSDRSGSGKFVLSVAWSLDGRRLACGSMDG
TICVFDVARAKFLHNLEGHCMPVRSLVYSPVDTRVLFSASDDSHVHMYDAEGKNLFGAMS
GHASWVLSLDVSPDGSGLATGSSDRTVRLWDLNMRAAVQTMSNHTDQVWGVAFRPPGGTG
VRAGRLVSVSDDKSISLYDYS
NT seq 966 nt   +upstreamnt  +downstreamnt
atgaagcttgcgggcttgaaatctgttgaaaacgctcatgaagaatcaatttgggcagct
acttgggttcctgcaactgacactcgaccaacgcttttgctaactggttcacttgatgag
acagttaagttgtggcgaccagacgagctcgtcttggagggaacaaacactggacactgc
cttggcgttgtatcggttgcagctcatccttctggagtgatagcagcttccgcttctctt
gatagttttgtgcgagttttcgatgttgatacaaacgccacgatcgccactcttgaagcc
cccccttcggaagtctggcaaatgcagtttgatcccaagggtacaattctggcagttgct
ggcgggggcagtgcatcagtcaagctatgggacactgctacgtggcagctagctgccact
cttactgttccccgtcctgagggatccaatccttctgataggagtgggagtggcaagttt
gtcctttctgttgcatggagtttagatgggagacgtttggcttgtgggtcaatggatggc
acaatctgtgtcttcgatgttgcccgtgccaaatttctacacaacctggaaggccattgc
atgcctgtgagatcgctcgtatattcccctgttgacacacgagtactgttttcggcctca
gatgattctcatgtgcacatgtacgatgccgagggaaagaacctgtttggggccatgtca
ggtcatgcaagctgggttttgagtctggatgtgagccctgatggttctggacttgcaaca
ggttcaagtgaccgaactgtacggctttgggacctgaacatgagggccgctgtgcaaaca
atgagcaaccacacagaccaggtttggggggtggcatttcgccctccaggagggactggt
gtgcgggcaggtcggctcgtgagtgtttcagatgacaagagcatatcactgtatgattac
tcatga

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