Telopea speciosissima (New South Wales waratah): 122652145
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Entry
122652145 CDS
T07910
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 6-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122652145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122652145
03036 Chromosome and associated proteins [BR:
tss03036
]
122652145
Enzymes [BR:
tss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122652145
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122652145
mRNA degradation factors
5'-3' decay
Decapping complex
122652145
Chromosome and associated proteins [BR:
tss03036
]
Eukaryotic type
Gene silencing
piRNA pathway
122652145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
DUF6610
Motif
Other DBs
NCBI-GeneID:
122652145
NCBI-ProteinID:
XP_043701752
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All DBs
Position
2:complement(17491350..17527372)
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AA seq
477 aa
AA seq
DB search
MNSRGRFGPGTMHGRGYPYIQPNYVQRNPLHSNLQHISQQQWPRRNQAEAETASIDDINP
KEEEKRVQSEGIDLSSQNWKAQLKLPPPDTRYKTEDVTVTKGNEFEDYFLKRELLMGIYE
KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQNKNSIQVVILVPT
RELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLVKKGV
CILKDCSMLVMDEADKLLSQEFQPLVEHLITFLPVNRQILLFSATFPVTVKAFKEKFLPR
PYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKI
TELGYSCFYIHAKMLQSHRNRVFHDFRNGACRNLVCSDLFTRGIDIQAVNVVINFDFPKN
SETYLHRVGRSGRFGHLGLAISLITYEDRFNLYRIEQELGTEIKQIPPQIDQAIYCK
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaattcaagaggcaggtttggtcctgggacgatgcatggtcgtgggtatccatacatt
caaccgaattacgttcagagaaatcctctgcattcaaatcttcagcatatttcgcaacaa
caatggcctcgacgcaaccaggccgaagccgaaacggcttccatcgacgatataaatccg
aaggaggaagaaaaaagggttcaatccgaaggcatcgacttaagttcacaaaattggaag
gctcaactgaaacttccgcctcctgatacacgttacaagacagaggatgttacggttacc
aaaggaaatgaatttgaggactactttcttaaacgggaactgcttatgggcatatatgaa
aagggttttgagagaccttctccaatccaggaagaaagtatcccaatagcgctgactgga
agtgatattcttgcaagagccaaaaatggaacagggaagaccgctgcattttgcattcct
gctctggaaaaaattgatcaaaataaaaattccatccaagtggttattttggtccctact
cgggagttggcccttcaaacctcacaagtatgcaaagagctcgggaagcatttgaaaatt
caagtgatggtaactactggaggaactagcttaaaggatgatatcatgcgtttgtatcag
ccagttcatttacttgtgggaaccccaggtagaatacttgaccttgtgaagaagggggtt
tgtatactgaaagactgttcaatgcttgtcatggatgaggctgataagcttctgtctcaa
gagtttcaacctttggtggagcacttgatcacttttctccctgtgaatcgtcaaattttg
ttattttctgctacattcccggtcactgtcaaggctttcaaagagaagtttctgccgaga
ccttatgtcatcaatctcatggatgagctgacactcaagggcataactcagtactatgca
tttgtagaggaaagacagaaagtccattgtctcaatactcttttctctaagctccaaata
aaccagtctataattttttgtaactcggtgaatcgtgtggagttgttggcaaagaaaatc
actgagctgggttactcatgcttctacatccatgctaaaatgctccaatctcatagaaat
cgggttttccatgatttccgtaatggtgcttgcagaaatcttgtctgctcagatctattc
actcggggtattgatatccaggcagttaatgtcgtcatcaactttgatttcccaaagaat
tctgaaacatacttgcacagagtgggtcgatctggaaggtttggccaccttggcctggct
attagtttaatcacatatgaggaccggtttaacctatataggattgagcaagaacttgga
actgaaatcaagcaaattcccccacaaattgaccaagctatttactgcaagtaa
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