Telopea speciosissima (New South Wales waratah): 122652166
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Entry
122652166 CDS
T07910
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A-like
KO
K12856
pre-mRNA-processing factor 8
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122652166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tss03041
]
122652166
Spliceosome [BR:
tss03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
122652166
Complex C
U5 SnRNP specific factors
122652166
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
122652166
NCBI-ProteinID:
XP_043701779
LinkDB
All DBs
Position
2:complement(61636581..61649680)
Genome browser
AA seq
2345 aa
AA seq
DB search
MWNNGQMAPPGAGAIPPPPAVQPSYTVPPSPAEAEAQLEEKARKWMQLNSKRYGDKRKFG
FVETQKEDMPPEHVRKIIRDHGDMSSKKFRHDKRVYLGALKFIPHAVYKLLENMPMPWEQ
VRHVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFDDE
EPPLDYADNLLDVDPLEPIQLEMDEEEDSAVYTWFYDHKPLVRTKLINGPSYRRWHLSLP
IMATLHRLAGQLLSDLIDHNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDEDW
NEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMVMYIKTEDPDLPAFYYD
PLIHPITTTNKERREKKLHDEEEDDDFYLPEGVEPLLESTQLYTDTTAAGISLLFAPRPF
NMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKKKH
LFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLT
TKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYTFSHVGQLTGM
YRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERW
LGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQ
HLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTV
CRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPPLS
YKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQRAF
KEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLL
VYKWCQGINNLQGIWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYVTA
KNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLILGLTRASEIAGPPQMPNEF
ITYWDTKVETRHPIRLYSRYIDKVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYNNK
KCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMSG
FEVRILPKIRMSQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQILMS
SGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSR
FPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRTGMSHEEDQLIPNLYR
YIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTL
AYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLF
KGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVG
FQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESVVMDLCQVLDQELDALEIETVQ
KETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDVFDQKASNKYWIDVQLRWGD
YDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLQSAFGNWFPGSKPLLAQAM
NKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTI
HKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVR
SLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKAT
EPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIVTEPHHIWPS
LSDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAEIE
KQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRVNHI
YVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGISPPDNPQVKEIRCIAMPPQ
WGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTTHARILESNKQWDGEK
CIILTCSFTPGSCSLTAYKLTPTGYEWGRINKDTGSNPHGYLPTHYEKVQMLLSDRFLGF
YMIPDNGPWNYNFMGVKHTLSMKYGVKLGAPREYYNEDHRPTHFLEFSNLEEGETAEGDR
EDTFS
NT seq
7038 nt
NT seq
+upstream
nt +downstream
nt
atgtggaataacgggcaaatggctcctcctggagctggggcaatacctcctccaccggcg
gtgcaaccatcttacaccgtccctccgtctcctgcagaggcggaggcgcagcttgaagag
aaggctaggaaatggatgcagctcaattcgaagcgttatggtgataagaggaagtttggg
tttgtagagacgcagaaggaggacatgccccccgagcatgttcggaagatcataagggac
catggagacatgtcttcgaagaaatttcgtcatgataaacgtgtttatctaggagccctg
aaattcatcccacatgccgtatacaagcttcttgagaatatgccaatgccttgggagcaa
gtccgccatgtgaaagttttatatcacattacgggagcaatcacatttgtcaatgaaatt
ccatgggttgttgaacctatatacttagctcagtggggtacaatgtggatcatgatgcga
agagaaaaaagagatcgccggcattttaagagaatgaggtttccaccatttgatgatgag
gaacctccattggattatgcagacaatttattagatgtggatccattggagccgatacaa
ctagagatggatgaagaagaagattctgctgtttacacttggttctatgatcataagcct
cttgtgagaaccaaacttatcaatggtcccagctacaggagatggcatttgtctctacct
atcatggctacacttcaccggcttgctgggcagttactttctgatctgattgatcacaac
tatttttacttgtttgacatggagtcattcttcactgcaaaagcattaaatatgtgcata
cctggtggccccaagtttgagcctttgtatcgtgatatggagaaaggagatgaggactgg
aatgagttcaatgatataaacaaactcatcatccgttcaccactcaggacagagtataga
attgcatttcctcatctttataacaataggcccagaaaagtaaagctttgtgtatatcac
actcctatggtaatgtacataaaaacagaggatcctgatttacctgcattttattacgat
cctttgatccacccgataaccactaccaacaaggagcggcgtgagaagaaacttcacgat
gaggaagaagatgatgatttttatctgccagaaggggttgagcctttgcttgaaagtact
cagctctatactgatactacagctgctggcatttcattattgtttgccccacgtcctttt
aacatgcgatctggtcgaatgcgaagggcagaagatataccacttgtgtcagagtggtat
aaagagcactgccctccatcatatcctgtaaaagtgcgtgtcagttaccagaagctattg
aaatgttttgtgctgaatgaactgcatcacagaccgcccaaggctcagaaaaagaagcac
ttgtttcggtctctgcaagctactaagtttttccaaaccacagaactggattgggccgaa
gctggtctccaagtttgcaagcaagggtacaacatgctgaatctgttgatacacagaaaa
aatctgaattatctccatctcgattataattttaatctgaaacctgtgaagactctgacc
acaaaggagcgtaagaagtcacgttttggtaatgcttttcatctgtgccgggaaatcttg
cgattgaccaagctagtagtagatgccaacatccagttccgcttggggaatgtcgatgcc
tttcaattggctgatggtttgcagtatacattttcacacgttggccagttgacgggtatg
taccgttacaaatataggcttatgagacagatcagaatgtgtaaagacttgaagcacttg
atttattatcgcttcaatacgggccctgtgggtaagggacctggatgtggtttttgggca
ccgatgtggcgggtgtggttattcttcctacgtggtattgtgcctttgctggaaaggtgg
ttgggtaatttactggcacggcagtttgaagggcgccattcaaaaggagttgcaaagact
gtcactaagcaacgtgtagaaagccattttgacttagaacttcgggctgctgttatgcat
gatgttctcgatgcaatgccagagggcattaagcagaacaaggcaaggactatcttgcag
catctcagtgaagcatggcgctgttggaaggcaaacataccttggaaggtgcctggtctg
ccagttcccatcgagaacatgattcttcggtatgttaagtcaaaagctgattggtggaca
aatgttgctcattataaccgtgaacgtataagaaggggtgcaacagttgataagacagtt
tgccgaaagaatcttggaagattgacccgcttgtggctgaaggcagaacaggaacgacaa
cacaattatttgaaggatggtccatatgtcacaccagaagaagctgttgctatttacacc
accactgtgcactggttggaatcaagaaagttttcccccatacctttccctccattgtcc
tacaagcatgatacaaagcttcttatccttgcccttgagaggcttaaagaatcttatagc
gttgctgtgagattaaatcagctgcaaagggaagaactggggctcatcgaacaagcatat
gacaatccacacgaggcattatcacgaataaagcgtcaccttcttacgcagcgagcattc
aaggaggttggtattgagtttatggatctttatagctatttgatacctgtctatgagatt
gagcctcttgagaagatcacagatgcataccttgaccaatatctatggtatgaaggagac
aagcgccatctcttccctaattggataaagcctgcagattcagagccacctccgctttta
gtctataaatggtgtcaaggtataaataatttgcaaggtatatgggacacgagtgaagga
caatgtgttgtgatgcttcagacgaaatttgagaagttctttgagaagattgacctcaca
atgcttaacaggcttctccggttggttcttgaccacaacattgcagattatgtgactgct
aaaaacaatgttgttttgtcttacaaggatatgagtcacacaaattcatatggtttaatt
cgaggtctgcagtttgcgtcgtttgttgttcagtattatgggttggtcctcgatctattg
attcttggtttgactcgagccagtgaaattgcgggacccccacagatgcctaatgagttc
attacatattgggataccaaagtggaaacaaggcacccaattcggttgtactcacggtac
atagacaaggtgcatatattgttccgcttcacccatgaagaggcacgtgaccttatccag
agatatcttacggaacatccagacccgaacaacgagaatatggttggatataacaataaa
aaatgttggcctagagatgcaagaatgaggcttatgaaacatgatgtgaatctagggaga
agtgttttttgggacatgaagaatcgacttcctcggagtatcacgacattagagtgggaa
aacagttttgtttctgtttatagcaaggacaatccaaacttgcttttcagcatgtctgga
tttgaagttcggattttaccaaagataagaatgagtcaagaagctttcagcaacacaaga
gatggggtttggaatttgcagaatgaacagaccaaagagagaactgcagtagcattccta
agggttgatgatgagcacatgaaggtgtttgagaatcgtgtgaggcagatccttatgtca
tctggatcaacaacatttacaaaaattgtcaacaagtggaatacagcccttataggcctc
atgacatatttccgtgaagcaactgtacatacccaggagctgcttgatttgctggtcaaa
tgtgagaataaaattcaaacccgtatcaagattggattgaactcaaaaatgcctagcaga
ttccctcccgtcatattctacactcctaaggaaattggaggacttggcatgctatcaatg
ggtcacatattgattccacaaagtgatcttcggtacagccagcaaacagatgtgggtgtc
actcattttcggactggtatgagtcatgaagaggaccagctcattcctaatctttatcgc
tacatacagccatgggagagtgaatttatagactcacagcgtgtttgggctgagtatgca
ctgaagcgacaggaagcacaatctcaaaacaggcgtctaacccttgaggatctggaggat
tcttgggatagggggatacctcgaatcaatactttgtttcaaaaagatcggcacactctg
gcatatgacaaaggatggagagtacggacagattttaagcagtatcaagttctaaaacag
aatccattttggtggacacaccagaggcatgatggaaaactatggaacttgaacaactac
agaaccgatgtcatccaagctcttggaggagtcgagggaattcttgagcataccttattt
aaaggaacatactttccaacttgggaaggtcttttctgggagaaggcatctggttttgag
gagtccatgaagtataagaagctgacaaatgcacaaagatctgggcttaaccaaatccct
aaccgtaggtttacactttggtggtcacctactataaatcgtgctaacgtttatgtgggc
tttcaagttcaattagatctgacgggaatatttatgcacgggaagattccaacattaaag
atttcgttgatccagattttccgtgctcatttatggcagaaggtacatgagagtgtggtt
atggatctatgtcaggttttggatcaagaactggatgctctagaaattgaaactgtgcag
aaagagacaatccatcctaggaagagttacaaaatgaacagctcttgtgccgacattctt
ctctttgctgcccataggtggcctatgtcaaagcctagtctggtagcggagtcaaaggat
gtgtttgatcagaaagctagcaataaatactggatagatgtacaacttcgttggggtgat
tatgattctcatgatattgagcgttatactagggcgaagtttatggattatacaactgat
aatatgtccatttatccgtctccaactggggtaatgatcgggcttgatctggcttataac
ttgcaatctgcttttgggaattggttcccagggtcaaaaccattgcttgctcaggcaatg
aacaagataatgaagtcaaatccggctttgtacgttctgagggaacgtataaggaaaggt
ttgcagttgtattcttctgagcctacggaaccgtatctgtcatctcaaaattatggagag
atcttcagtaatcaaataatatggtttgtcgatgacacaaatgtgtaccgtgttacaatc
cacaagacctttgaagggaatttgacaacaaaacctatcaatggtgccatctttattttc
aatccaaggacaggccagctctttttaaaggttatccacacgagtgtgtgggcaggacaa
aagcgtctcggtcagctcgccaagtggaaaacggcagaagaagtagctgctctggttcgg
tctttgcctgttgaggaacagccaaagcaaattattgtgacccgcaaaggaatgctggat
cctttggaggtccacttgcttgattttccgaacattgtaatcaaaggaagtgaattgcag
ctgccattccaggcatgcttaaagattgagaaattcggtgatttgattttgaaggctaca
gagcctcagatggtcttattcaacatttatgatgattggttgaagagtatatcatcctac
actgcattctcccgtctcattctgattttgcgtgcgcttcatgtaaacaatgagaaggca
aaaatgttgctgaagcctgacaaaacaatcgtcactgaaccacatcacatctggcctagt
ctctcagatgatcaatggatgaaggttgaagttgctttgagagatcttatactctcggat
tatgccaaaaagaataatgtgaatacatcagcgttgactcagtctgagatccgtgatatc
atacttggggctgagataactccaccttcacaacagagacagcagatagcagaaattgaa
aagcaggcaaaagaagcaagccagttgacagcagtcacaacaaggacgactaatgttcac
ggtgatgaactcattgtgaccaccacaagtccctatgaacaggcagcatttgggtccaaa
actgattggcgtgtgagagctatttcagctacaaatttgtatctccgagtcaatcacata
tatgtgaactcagaggacatcaaggagactggctacacatatatcatgcccaaaaacatc
ttgaagaagttcatctgcatagcagatctgcggactcaaattgcaggttatctctatggg
ataagtcccccagacaatcctcaagttaaggaaatacgctgtattgctatgcctccacag
tggggaactcaccagcaagttcatctcccatctgccctccccgaacatgacttcttaaat
gatctagagccattgggatggatgcatactcaaccaaatgagcttcctcagctgtcacca
caggatctcactacacatgcccggattctggagagcaataagcaatgggatggggagaag
tgcattattctaacttgcagttttaccccaggatcttgctcattgacagcatataagctt
actcccacaggttatgagtggggccgaataaacaaggacaccggaagcaatcctcatggt
tacctgcctacccattatgagaaggttcagatgcttctcagcgaccgcttcttaggtttc
tacatgattcctgacaatggtccttggaattacaacttcatgggggtgaagcacacgctg
agcatgaagtacggggtcaagcttggagcacctagagagtattataacgaggatcaccga
cccacacattttctggaattcagcaacttggaggagggagagaccgctgagggagacagg
gaagatacattctcgtag
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integrated database retrieval system
