Telopea speciosissima (New South Wales waratah): 122652327
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Entry
122652327 CDS
T07910
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122652327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122652327
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122652327
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122652327
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
122652327
NCBI-ProteinID:
XP_043701972
LinkDB
All DBs
Position
2:6605309..6629280
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AA seq
633 aa
AA seq
DB search
MSGLLNSALNGSTSNLPDTTARSFATSFSSQSASGAASPVYHHAGTIQGLHNVHGSFNVP
NMPGTVASRNSTLNGVPSSGIQQPMGSLSSGRFASNNLPVALSQISHGNSHGHSGVTNRG
GLGVSPILGNAGPRITSSMGNIVGGGNIGRSINSSGGLSVPGLASRLNLTANSGSGSLGV
HGPNRLMSGVLQPASLQMISMLGNSYPTAGGPLPQSQVQAGNNLSSMGMFNDVNSNDSSP
FDMNDFPQLTGRPNSAGGPHGQFGSIRKQNVGVSPIVQQNQEFSIQNEDFPALPGFNGGN
SDYAMDLHQKEQLHDNAVSMMQSQHYPMGRSAGFNLGGTYSSHRPQQQQQHAPSVSGSGV
SFTPANSQDMLHLHNSDHWVPSSHAAYHSQVQTGAQPGIGLRPLNSPNSVSGIGSYDQLI
QQYQQHQNQSQFRLQQMSAVNQSFRDQGPKSMQVPQAVPDRFGLLGLLSVIKMSDPVLMS
LALGIDLTTLGLNLNSTDNLHKTFGSPWSDEPAKGEPEYSVPECYYTKPPPVLHQMYFSK
YQLETLFYVFYSMPKDEAQLYAANELCNRGWFYHKENRLWFIRITNMEPLVKTNTYERGS
YLCFDPNTWETVRKDNFVLHYELLEKRPLLPQH
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgtctgggctacttaattctgctttgaatgggtcaacttcaaatctcccagacacgaca
gctagatcctttgcgacatctttttcttcccaatctgcatctggagcagcatcccctgtt
tatcatcacgctggaaccatacaagggttgcataacgtgcatgggagtttcaatgtgccc
aacatgccaggcacagtagcatcaagaaattcaacactgaatggtgtcccttcaagtggc
attcagcaaccaatgggaagcctctctagtggacgatttgcatcgaacaatcttcctgtt
gctctttcacagatatctcatggcaactcacatggacattcaggggtcacaaatagagga
ggattgggagtctctccaattttgggaaatgcaggtcctcgaataacaagctcgatggga
aacattgttggcgggggcaacattggaaggagcataaactctagtggaggattgtcagta
cctggtcttgcttcacgcctaaacttgactgctaatagtggatctggaagtctgggtgtg
catggacctaacagattaatgagtggtgtgcttcaaccagcatcactgcagatgatttca
atgcttggaaattcatatcctacagctggaggcccgctacctcaaagccaagtccaagca
gggaataatttaagctcaatgggaatgtttaatgatgtgaactccaatgacagttctcct
tttgacatgaatgatttccctcagttgactgggcgccctaattctgctggagggccacac
ggacaatttggttctatacggaagcaaaatgttggtgttagtcctatcgtccaacagaac
caagaattcagcatccaaaatgaagatttcccagctttacctggatttaacggaggaaat
tctgattatgcaatggatttgcatcagaaagaacagcttcatgacaatgctgtgtccatg
atgcagtctcagcactacccaatgggtaggtctgctggattcaacttggggggaacatat
tcatctcatcgtccacagcaacagcagcaacatgcgccatcagtcagtggcagtggggtt
tcctttactcctgctaacagtcaggatatgctccatttacataactctgatcattgggtc
ccatcttcccatgcggcctatcattcacaggttcagactggtgctcaacctggaattgga
ttgagacctttgaactctcccaattcagtatctggtataggctcttatgatcagcttatt
caacagtatcaacaacaccaaaatcaatcacagtttcggctgcagcaaatgtcagctgtg
aatcagtcgtttagagatcagggcccgaagtcaatgcaggtgccacaagctgttcctgat
cgatttggtttgcttggtttactaagtgtgataaagatgagtgatcctgtcctgatgtcc
cttgcacttggaattgatctgacaactcttgggctaaatttgaactcaacggataacctt
cacaaaacttttggttccccatggtccgatgagcctgccaagggagagccagagtacagt
gtgccagaatgttattatactaagccaccacctgtgctacatcaaatgtatttttcgaag
taccagttggaaacgttgttttatgtcttttacagcatgccgaaagatgaggcccagttg
tatgcggctaatgaactgtgtaatagagggtggttctaccacaaagaaaaccgtctatgg
ttcataaggatcactaacatggagccacttgttaagacaaacacttacgagaggggatcc
tacctatgttttgatccaaacacatgggaaacagttcgcaaggataactttgttctccat
tatgagttgttggagaagagaccattgctacctcaacattaa
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