Telopea speciosissima (New South Wales waratah): 122652371
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Entry
122652371 CDS
T07910
Name
(RefSeq) replication factor C subunit 1-like isoform X1
KO
K10754
replication factor C subunit 1
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03030
DNA replication
tss03410
Base excision repair
tss03420
Nucleotide excision repair
tss03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122652371
03410 Base excision repair
122652371
03420 Nucleotide excision repair
122652371
03430 Mismatch repair
122652371
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tss03032
]
122652371
03400 DNA repair and recombination proteins [BR:
tss03400
]
122652371
DNA replication proteins [BR:
tss03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
122652371
DNA repair and recombination proteins [BR:
tss03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
122652371
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_lid_RFC1
RCF1-5-like_lid
AAA_22
AAA_30
PTCB-BRCT
Rad17
AAA_19
AAA_assoc_2
AAA_18
nSTAND3
BRCT_2
RuvB_N
AAA_5
Sigma54_activ_2
Zeta_toxin
RNA_helicase
YceD
AAA_14
AAA_16
Gp44_lid
DNAX_ATPase_lid
SurA_N
NTPase_1
AAA_28
Motif
Other DBs
NCBI-GeneID:
122652371
NCBI-ProteinID:
XP_043702019
LinkDB
All DBs
Position
2:49081358..49109097
Genome browser
AA seq
983 aa
AA seq
DB search
MAQSDIRKWFMKQHDKGNGNASKPGKPTMEKLSPATSQPEKKSKDQVQGSQDGSGRRKTS
KFFATDTEEPRDEKEMETTPAKRKSQKIRDELHTKPPATKKLHRVEDDDDDDFIMIDTRK
SSAEVTPTKKLKSGSGRGIVQKPVDTDENDENTMDDEDIESSLKTGGRGGGGRGGGGRGA
AAAPARGRGRGGGRGGFMNFGERKEPPHKGEKEVPEGAPGCLAGLTFVISGTLDSLEREE
AEDLIKRHGGRVTGSVSKKTNYLLVDEDIGGRKSLKAKELGTPILTEDGLFDMIRSTKPA
KIPVQEEIKKRTADKNVGSQAKESPQKEVKNKVTNSPAKKVAPKVPATGYSSAKQKDLRT
AQCSLPWTEKYRPKTPNDIIGNQSLVKQLHDWLTNWSQNFSHGGQKGKGKKQNDSGSKKA
VLLSGTPGIGKTTSAKLVSQMLGFQAIEVNASDNRGKADSKIFKGVGGSTANSVKELVSN
EALSVKSDWSKHAKTVLIMDEVDGMSAGDRGGVADLIASIKSSKIPIICICNDRYSQKLK
SLVNYCLLLSFRKPTKQQMAKRLLQVANQEGLQVNEIALEELAERVNGDMRMALNQLQYM
SLSMTVIKYDDIRQRLLSSMKDEDISPFTAVDKLFGFNAGKLRMDERVDLSMSDPDLVPL
LIQENYLNYRPSSVGKDDNGVKRMNLLARAAESIGDGDIINVQIRRYRQWQLSQTGSVAS
CIIPAALLHGQREILEQGERNFNRFGGWLGKNSTMGKNLRLLEDVHVHFLASRESSSDRE
TLRLDYFNLLMKRLTDPLRILSKDEAVQKVVEFMDTYSLSQEDFDTIVELSKFQGHPNPL
EGIQPAVKAALTKAYRGGSSSRVVRAADLITLPGIKKAPKKRIAAILEPVEVGLTEETRD
ALAESEEENSSDAEEADDTINVEKKLQLDLQSSNSKGIQVQLDLRNKGGSDAKKTPASKS
KGGSKPTEQKRGQSSGTSAKRKR
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atggcacagtcagatattcggaagtggtttatgaaacaacatgacaagggcaatgggaat
gcatcgaagcctgggaaacccactatggaaaagctttctccagcgacctctcaaccagag
aagaaatctaaggatcaggtacagggaagtcaagatggctcaggaagaaggaaaactagc
aaattttttgccactgatactgaggaaccaagagatgagaaagagatggaaactacccca
gccaaaaggaagagccaaaagattagggatgagctgcacactaaacccccagctacaaag
aagcttcacagggtagaagatgatgatgatgatgacttcataatgatagatacaaggaaa
agctctgctgaggtcactcctaccaaaaaattgaagagtgggtcagggaggggaattgtt
cagaagcctgtagatactgatgaaaatgatgaaaataccatggatgacgaagatattgaa
tcttctcttaaaactggtggaaggggtggcggtggaagaggtggcggtggaagaggagca
gcagcagctccggctaggggaagaggaagaggtggtgggagaggtggattcatgaatttt
ggtgaaaggaaagaacctccacacaaaggggaaaaggaagtccctgagggtgctcctggc
tgtttggctggtctaacctttgtgattagtggtactcttgacagcttggaaagggaagaa
gcagaagatttaattaaacgccatggtggtcgtgttactggatctgtcagcaagaaaacg
aattatcttttagttgatgaagatattggagggagaaaatctttgaaagccaaagaactg
ggtactcccattttgactgaagatgggttatttgatatgatccgttcaacaaaacctgca
aagattcccgtacaagaagaaatcaagaagagaactgcagataagaatgttggatcacaa
gcaaaggaaagtcctcaaaaagaagtaaagaataaagttaccaactctccagcaaaaaaa
gttgctccaaaagtaccagccactggttattcttctgctaagcagaaggatctacgtact
gcacaatgttcattaccatggacagagaaatacagacccaagactccgaatgacattatt
ggcaatcaatcccttgttaagcagctccatgactggctgacaaattggagtcaaaatttt
tctcatggcggtcaaaagggaaagggaaaaaagcaaaacgatagtggatcaaaaaaggct
gttcttctaagtggaacacctggtataggaaagacaacatcagcaaagttggttagccaa
atgcttggcttccaggccattgaggttaatgctagtgataatcgtggaaaagctgattcc
aaaatatttaaaggagttggtgggagcactgcaaattctgtgaaggaacttgtcagcaat
gaagctttgagtgttaaaagcgattggtcaaaacatgctaaaactgtcctgataatggat
gaagttgatggaatgtctgctggtgatagaggaggagtggctgatctcattgctagcatc
aaaagttccaaaattccaatcatctgtatctgtaatgacagatacagtcaaaaactgaaa
agtcttgttaactactgtttgcttctgagcttccgaaaacctacaaaacaacagatggca
aagagattactacaagtcgcaaatcaggaagggcttcaagttaatgagattgcacttgag
gaacttgcagagagagttaatggagatatgcgtatggcactaaatcagttgcagtatatg
agcctttcaatgacagtcatcaaatatgatgacataagacaacgccttctgagtagtatg
aaggatgaagatatatcaccttttactgctgttgataagctatttgggttcaatgcgggg
aagttgagaatggatgagagggttgacctgagcatgagcgatccagacctagtccctctt
ctcattcaggaaaattatctcaattaccgaccaagttctgttggtaaggatgacaatggt
gtcaaacgaatgaatttgctggcccgtgctgctgagtctattggagatggggatataatc
aatgtgcagattcgaagatatcgacagtggcaactctcccaaactggttctgttgcatct
tgcataattcctgctgctttgttgcatgggcaaagggagatacttgaacagggagagagg
aatttcaatagattcggtggctggctgggaaagaactcaacaatggggaaaaatttgagg
cttttagaggatgtgcatgttcatttccttgcttctcgtgaatctagttcagatagggag
actttgcgacttgattacttcaacctcctgatgaaacgattaactgacccacttcgcata
ctttctaaggatgaggcagtgcagaaggttgttgagttcatggatacttactctttaagt
caggaggattttgatacaatagtggaattgtcaaagttccagggacatccaaatcctctg
gagggcatacaaccagctgtgaaagctgcactgacaaaggcatacagaggaggcagcagt
tcacgtgtggtacgtgcagcagacttaatcacacttcctggaataaaaaaggctccaaag
aaacggatagcagctattttagagccagtggaagttggtttaacagaagagactagagat
gcactggcagaaagtgaagaagagaattcttcagatgcagaagaggcggatgatactatt
aatgtcgagaagaagctacagttggatctccagagtagcaatagcaaagggattcaagta
caactggacttgagaaacaagggaggttctgatgcaaagaagacaccggcaagcaaatca
aaaggaggctccaaacctacagagcagaaaaggggacaaagttcaggaaccagtgcaaag
aggaagagatga
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