Telopea speciosissima (New South Wales waratah): 122652613
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Entry
122652613 CDS
T07910
Name
(RefSeq) SNF2 domain-containing protein CLASSY 2-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122652613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tss03400
]
122652613
DNA repair and recombination proteins [BR:
tss03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
122652613
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
122652613
NCBI-ProteinID:
XP_043702332
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All DBs
Position
2:complement(33469596..33477029)
Genome browser
AA seq
1375 aa
AA seq
DB search
MAKRHLYRSRHPFEIHPFEAFSHGSWRTIEHVRIGDGRVAMRFVDPEDPGFEMDEEVSND
TLRIRSRKATLSDCACFLRPGIDVCVHLADPTKDSADKRMLKMVWIDAKINSIERRPHES
QCTCRFDLTCHTTHLPLGKGKGKLGRIRDVRIDQIAIIQQLQRKPCEDGYYRWSYSQDCR
FVHEAKLFRGHFSSDISWLLVTSILKELKFDLRSVERKIVYQILHGDDHDVCSSDTTNNV
AINFQMDNEILRPITRTFIPVGTFVSGSAIDACPVHDLQEDDSMQLYDPIELRRSKRRNV
QPERFVSYRGFLKAKPSIVGTETGKITLSLILHPEYNGHLMHSESFRQSIDGEKMVVDCT
GENMMEDNAGEKIVADSKGEKMVEDIKVGYGKKSPVNQSSVKSIDFMSGGTTRMENQISL
LENHEIGKVTAAPYGRPEVDKGLFTGVSHFSFPDYVSRKKKRKLKSPISNCTVSSPRATS
NIPLTAEGVSMLHPQYYPPIQILENPIPKVARVISEHGHRQGSSSAMGERAISGKRFREM
KEKRYRKMKIIWKVKGSNKKPLGRVSNLFCSKIHRSGETRTRRKAFLSTNESKKMIESFM
KNIESDIKREDPHADAQWEATRAMNCSNQRWHDRWTPFLNDQAENSELEVLWKEMELSMA
TVHFIGEIQGSGLDIYDEVLKKSSKDDGHLCQHEFKLDEEIGHVCQLCSFVSTEIRDVSL
PFLQTTSWIANKELHEEEELRWATAGHEDLDIFGNPGSSMEIALSKRSDNVWAMIPEFRM
KLHFHQKKAFEFLWKNIVGSLTPAEMEPCSKRTGGCVISHTPGAGKTLVVIAFLVSYLKM
FPGKRPLILAPKTTLYTWYKEMKKWDVSFPVYQIHVRANFRYEIHNHAVEESVGDRRSNQ
RDQHVMDCLEKIQKWHEHPSILLMGYTSFLALTRDGSKYEHRRYIGKILKQSPGILVLDE
GHNPRSTRSRLRKALMKVKTDLRILLSGTLFQNNFTEYFNTLCLARPVFVYEVLRKLDPN
VKYRKGRKCSKISMETLARRFFIEKIAKKIKSKVVEERRRGLSMLRKITNRFIDVYEGGV
QDSLPGLQSYTLLMKSTVIQQDLQTRLQNQKVAYKGYPLELELLITLGSIHPWLITTVAC
VDKYFTMEELQDLEKHRLDIKKGSKVRFVVSLVQRCIMKMEKVLIFAHNIAPISLFVEIF
EMIFGWQMGEEVLVLHGDQELYERARVMDKFEESEGPSRVLLASITACAEGISLTAASRV
VLLDSEWNPSKTKQAIARAFRPGQERIVYVYQLLASGTLEEEKYGKTTWKEWVSSMIFSE
AIVDDSSHKQVENIDDDVLREIVEDQDKLFHMIMKHDKLSNGLDKGKASALFQGK
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagagacatttgtatcggagcagacatccatttgagatacaccctttcgaggca
ttctctcatggctcatggaggacaatagagcatgtcagaattggggatgggagggtagcc
atgcgttttgtagatcctgaagatcctggatttgagatggatgaggaagtctctaatgac
actctacgcatacgatctcgaaaagcaaccttatctgattgcgcctgtttcttgaggcct
gggatagacgtatgtgtacatttggcggatccaaccaaagactcagcagataaaaggatg
ctaaagatggtctggattgatgctaaaataaattcaattgagaggaggccacatgaatca
caatgcacctgccggtttgatttaacctgccatacaacacatcttcctctaggcaagggg
aagggaaaacttggtaggatcagagatgtgagaattgatcagattgcaatcattcaacaa
ctgcagagaaaaccttgtgaagatgggtattaccgatggagctattctcaggactgccgt
tttgtacatgaagctaaactgttccggggtcatttctcttcagatatttcatggctacta
gttacatccattttgaaggaactaaaatttgatttaagatcagtagagagaaagattgta
tatcaaattttgcatggtgatgatcatgatgtgtgttcttcagatactaccaacaatgta
gccataaatttccaaatggacaacgaaattcttagaccaattaccaggacttttattcct
gtgggtacatttgtttcaggtagcgccattgatgcttgccctgttcatgatctgcaggaa
gatgactcaatgcagttgtatgatcccatcgagttgcggcgttccaaacgtagaaatgtt
caacctgagcgtttcgtgagttacagagggtttttaaaagcaaaaccttctattgttggg
acagagacaggcaagataacattgtcactaatattgcatccggaatataatggccatttg
atgcatagtgagtctttcagacagtccattgatggtgaaaagatggttgtagattgcact
ggtgaaaatatgatggaagataatgcgggtgaaaaaattgttgcagatagtaagggtgaa
aagatggttgaagatattaaggttggctacgggaagaagtccccagtgaaccaaagcagc
gtcaaatcaatagactttatgtcaggtggaactactagaatggaaaatcaaatatcactt
cttgagaatcatgagataggtaaagttactgctgctccttatggtagaccagaagtagac
aaaggcttgtttacaggagtttcacacttttcattcccagattatgtatcacggaaaaaa
aagagaaaattgaagtctcccatcagcaactgtactgtttcctcccccagagctacctcc
aatattcctcttactgctgaaggtgtttctatgttgcatccacagtattatcccccaatc
caaattcttgaaaaccccataccaaaggttgctcgggttatttctgaacatggtcatagg
cagggatcatcatctgcaatgggagaaagagctatatcaggtaaaagattcagggaaatg
aaagaaaaaagatacagaaaaatgaaaataatatggaaggtgaaaggttcgaataagaag
cctctaggaagagtaagtaatctgttctgctcaaaaatacataggtctggtgaaacaaga
actaggagaaaggccttcttaagtacaaatgagtccaagaaaatgatagaaagtttcatg
aagaacatagagtctgatatcaagagagaagatccacatgctgatgctcagtgggaagca
acgagggcaatgaactgttcaaaccaaagatggcatgacagatggacaccttttcttaat
gatcaagcagaaaactccgagcttgaagttttatggaaagaaatggagctttcaatggca
acagttcattttattggagaaattcagggatcagggctggatatctatgacgaggttctc
aagaagtcaagcaaagatgatgggcatttatgccagcatgaatttaaattggatgaagaa
attgggcatgtgtgccaattatgcagctttgtgagcactgaaataagagatgtttcgctg
ccatttttgcaaactacaagttggattgcaaacaaggagcttcatgaagaagaagaattg
aggtgggccacagccggacatgaggacctagatatttttggcaatcctggttcttcaatg
gaaatagctttatcaaaaaggagtgacaatgtgtgggccatgataccagaattcagaatg
aagttacacttccaccaaaagaaagcttttgaatttctatggaaaaacattgtcgggtct
ctgactcctgctgaaatggaaccgtgttccaaaagaacaggtggctgtgtaatctcccac
accccaggagctggaaaaactctggttgtaattgcattccttgtaagctacttgaaaatg
ttccccggaaaacgaccattaatccttgctccaaagaccactctctacacctggtacaaa
gaaatgaagaaatgggatgtatcatttccagtttaccaaatccatgttcgggcaaacttc
aggtacgagatccataatcatgcagtggaagagtctgtgggtgatcgcagatctaaccaa
cgtgatcagcatgttatggattgcctagagaaaatacaaaaatggcatgaacacccaagt
attctgctcatgggctacacttcctttctagcattgacacgagatggatcaaagtacgaa
cacaggaggtatattggtaaaatcttgaaacaaagcccaggaattcttgttcttgatgaa
ggccacaacccaaggagtactagatcaaggttaagaaaagctctaatgaaagtgaagaca
gatttgagaattctgctttcagggacactgtttcagaataattttaccgagtatttcaat
actctctgcttggctagaccagtctttgtctatgaggtgttaaggaaactggacccaaat
gtgaaatatcggaaagggaggaaatgctctaaaatttcaatggagacattagcgagaaga
tttttcatagagaagattgcaaaaaaaatcaaatctaaagtagtggaagaaagaaggcgt
ggtctgagtatgttgaggaaaattacaaatcggttcatagatgtatatgaaggtggagtt
caagactcactgcccggattacaaagttacacacttttgatgaaatcaacagtcatccaa
caagatcttcaaacaaggctacaaaaccagaaagttgcatacaagggatatcctctagaa
ctggaattgttgattactcttgggtccatacatccttggcttatcacaactgtagcttgt
gttgataaatacttcaccatggaggaactacaagatcttgagaaacataggcttgatata
aagaaaggttcaaaggtcagatttgttgtgagccttgtgcagaggtgcatcatgaagatg
gagaaggttctgatctttgcccataacattgcacccataagtctatttgttgaaatattt
gagatgatctttggctggcagatgggagaagaagtactggtccttcatggtgatcaagag
ttatatgaacgagcaagggttatggataaatttgaagaatcagaggggccttcaagagtt
cttcttgcttcaatcacagcctgtgccgaaggcattagtttaactgctgcatcacgagtt
gtcttattggattcagaatggaatccatccaagacaaagcaagctattgcacgggcattc
aggcctggtcaggagaggatagtctacgtctaccagcttttggcatcagggacgctggaa
gaagagaagtacggtaagactacatggaaggagtgggtctcaagtatgatttttagtgag
gctattgtggatgactcttcacacaagcaggttgagaacatcgatgacgatgttctgagg
gagatagttgaggatcaagacaaattattccacatgataatgaagcacgataagctttca
aatggtttggataaaggtaaagcatctgcactttttcaaggaaagtaa
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