Telopea speciosissima (New South Wales waratah): 122652904
Help
Entry
122652904 CDS
T07910
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss00040
Pentose and glucuronate interconversions
tss01100
Metabolic pathways
Module
tss_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122652904
Enzymes [BR:
tss01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
122652904
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Motif
Other DBs
NCBI-GeneID:
122652904
NCBI-ProteinID:
XP_043702723
LinkDB
All DBs
Position
2:complement(64498541..64513817)
Genome browser
AA seq
588 aa
AA seq
DB search
MQALQFHNCNGLQLSGLTHLNSPRNHISINGCNGVTFSHINISAPENSKNTDGIDISDST
QILIQDSYIGTGDDCVAINGGTSFINITNVTCGPGHGISVGSLGANGAHDTVEEVHVIDC
TFVGTMNGARIKTWQGGSGYVRNITFEQITLSAVNNPIVIDQYYPNYLQEGSDIEVSDVK
FIGVHGTSTAEDAITLKCSNSDRVAIFLILFMALLISSNGFDVLTYDAVGDGITDDSVAF
LKAWAAVCGTDSSSTPILTVPSGMTFLLKPIQFNGPCKAYDITVEVSGNIVAPDSISEYE
GHNDVWLSFNSIECLNINGTGQIDGRGSVWWPRSNEKSNHQRPKALQFHNCNGLQLSGLT
HLNSPKNHIAINRCNGVIISQLNITAPKNSPNTDGIGISDSTQILIQDSYIGTGDDCVAI
NGGTSFINITNVTCGPGHGISVGSLGANGAHETVEEVYVKDCTFVGTMNGARIKTWQGGS
GYARKITFEQIILSEVKNPIVIDQYYPNYLQVKGSDIEVSDVKFIGVQGTSTAENAITLK
CSNSVGCTNIELTQINITSAVPGKVTSSLCINAHGIATDCNPPVECLT
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcactacaattccataactgcaacggtcttcaactaagtggactgacacatttg
aacagcccaagaaaccatatctccattaatggctgcaatggagtaactttttctcacatc
aatataagtgcgccagaaaacagcaaaaacactgatggtattgacatatcagactcaacc
caaattctaatccaagattcttacattggaacaggtgatgattgtgtggccattaatggt
ggtacctcttttatcaacattaccaatgttacatgtggaccaggccatggcataagtgtg
ggaagcttaggagcaaatggagctcatgatacagtggaagaagtccatgtgatagattgt
actttcgttggaaccatgaatggagcaaggatcaagacatggcagggtggatctggatac
gtaagaaatatcactttcgagcaaattacactttctgcagtaaacaaccctatcgtcatc
gaccaatattaccctaattacttgcaagaaggttccgacattgaagtgagcgacgtcaaa
ttcataggagtgcatgggacttcaactgcagaggatgccatcacattgaagtgcagtaat
agcgaccgtgtcgccatcttcttgatcttatttatggccttactcatttctagtaatgga
tttgatgtgttaacctatgatgctgttggagatggcataactgatgactccgtggccttt
ctgaaagcatgggcagcagtgtgtggaacagatagttcaagtactcccatcctcaccgta
ccttctgggatgacattcttgttgaagcctatccagttcaatggtccttgcaaagcctac
gacattactgttgaggtttcagggaacatagttgcgcccgattctatttcggaatatgag
ggacacaatgatgtgtggctttccttcaattccatagaatgcctcaacatcaatggaact
ggccaaattgatggccgaggcagtgtttggtggccacgatctaatgagaagagcaatcac
caacgacccaaggcactacaattccataactgcaatggtcttcaactaagtggattgaca
catttgaacagcccaaaaaatcatatcgccattaatcgctgcaatggagtaattatttct
cagctcaatataactgcgccaaaaaacagcccaaacactgatggtattggcatatcagac
tcaacccaaattctaatccaagactcttacattggtacaggtgatgattgtgtggccatt
aacggtggcacctcttttatcaacattaccaatgttacatgtggaccaggccatggcata
agtgtgggaagcttaggagcaaatggagctcatgaaacagtggaagaagtctatgtgaaa
gattgtactttcgttggaaccatgaatggagcaaggatcaagacatggcaggggggatct
ggatatgcaaggaagatcactttcgagcaaattatactttcagaagtaaagaaccccatc
gtcatcgaccaatattaccctaattacttacaagttaagggttccgacattgaagtgagc
gacgtcaaattcataggagtgcaagggacttcaactgcagagaatgccatcacattgaag
tgcagtaatagcgtgggttgcaccaacattgaattgacccaaatcaatatcacatcagca
gttccaggcaaagtgacttcctccttatgcattaatgcccatggaatagctacagattgt
aatccacctgtggaatgtctaacttaa
DBGET
integrated database retrieval system
