Telopea speciosissima (New South Wales waratah): 122653924
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Entry
122653924 CDS
T07910
Name
(RefSeq) pre-mRNA-processing factor 39-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
tss
Telopea speciosissima (New South Wales waratah)
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tss03041
]
122653924
Spliceosome [BR:
tss03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
122653924
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
NRDE-2
TPR_MalT
TPR_12
Motif
Other DBs
NCBI-GeneID:
122653924
NCBI-ProteinID:
XP_043703821
LinkDB
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Position
3:66321620..66351606
Genome browser
AA seq
839 aa
AA seq
DB search
MGDSETVVAQASTVMEYPSTGYIPTEYSAVSSNITPDGVAFTAGAAVDMNAPSIPTDTAY
PLPDGSSSAAGNACNSDPSSVTQEPPVTSLNESKPAVAVANTSENLISQESVVPDSAQIV
GCDSSVNGNGVIEARDFIHTGNGENGNASNDAGGAEQPYEESSALSAEEERLWSIVKANS
LDFNAWTALIEETEKVAEDNILKIRKVYDTFLAEFPLCYGYWKKYADHEAHLGSIDKVVE
VYERAVVAVTYSVDIWLHYCMFAISTYGDPDTVRRLFERGLAYVGTDYLSYPLWDKYIEF
EYSQQQWCHLAMIYTRIFENPNQQLDRYFNSFQELTASRPLSEIRSAEEAAAAVAANLEA
GGQEAEGEVPPNSEEQSTKPVSAGLSEAEELEKYVAIREDMYKKAKEFDSKIIGFETAIR
RPYFHVRPLVDSELENWHSYLDFIEKEGDLHKIVKLYERCLIACANYPEYWIRYVLCMEA
SGSLDLANNALTRATQVFVKRQPEIHLFAGRFKEQTGDVSGARAAYQLVHSGISPGLLEA
VIRHANMEHRLGNLEDAFSLYEQAIATEKGKEQSQTLPMLFVQYARFVYLVAGNAEKARE
VLVEAIDNAQLSKPLLEALIHLEAIQSAAKRIDYLDSLVEKFILPILENPNPASSADREE
LSGIFLEFLNLFGDAQSIKKAEDRHAKLFLRQRYTSELRKRHAEDFLASDKAKLVKSYPG
VPSTTQSLMGAYPTAQNQWTAGYGLQPQAWSQASQAGQQWNPGYAQQAGYGGYTGYGSGY
THPQIPSSTAQSTAYGSYPPTYPAQTIPHQSYAQPATAAAFAPTQQQAPAQQAYYGTYY
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgggggacagtgaaactgtggttgctcaagcatcgactgttatggaatacccatccaca
ggctatattccaaccgagtactctgctgtaagctcaaacattactccagatggtgttgct
ttcaccgctggagctgctgtggatatgaacgctccatccattccaacagatactgcttat
cccttgccggatggttctagttcagctgctggaaatgcatgcaactctgatcctagttct
gttacacaagaacctcctgttacctcactaaatgagtcaaagccagctgttgctgtggca
aatacttctgagaatcttatcagccaggagagtgtagtaccagattcagctcaaattgtt
ggttgtgattcttctgtaaatggcaatggtgttattgaagcgagggattttattcataca
ggaaatggtgaaaatggcaatgcttcgaatgatgctggtggggctgagcaaccgtatgaa
gagagttctgcactttctgctgaagaagaacgactatggagcattgtgaaagcaaattcc
ttggacttcaatgcgtggactgccctcattgaagagacggagaaggttgcggaggataac
atattaaaaatccggaaagtttatgatacctttttggcggaatttcccttgtgctatgga
tactggaaaaagtatgcagatcatgaggctcatttgggttccattgacaaagtagtggag
gtatatgagagggcggttgtagctgtgacctattcagtggatatttggttgcattattgc
atgtttgctatatctacatatggagatcctgatactgttcgaaggttatttgaacgtgga
ttggcttatgttgggacagattatctttcctatcctctctgggacaaatatatagagttt
gaatactcacagcagcagtggtgtcatttggccatgatctacacaaggatttttgagaac
cctaatcaacaacttgatcgctatttcaacagtttccaggagttgactgcaagtcgacct
ttgtctgagatacggagtgctgaggaagctgctgccgcagtagctgcaaacttggaggct
ggtggccaagaagctgaaggagaggttcctcccaacagtgaggaacaatctacaaaacct
gtaagtgcaggcttatcagaagcagaggagttggagaagtatgtcgccattagagaagac
atgtataagaaagctaaagagttcgattctaagatcattggttttgaaacagctattagg
aggccttactttcatgtacggcccctcgttgattcagagctagaaaattggcacagctat
ctggattttattgaaaaagaaggtgacctccacaagattgtcaagctgtatgagaggtgt
ctaattgcttgtgccaactatcctgagtactggatacggtatgtcttatgcatggaagcg
agtggaagtttggatcttgcaaataatgcacttactcgtgctacgcaagtctttgtcaag
agacaaccggagattcaccttttcgctggtaggtttaaggagcaaactggggatgtttca
ggagcacgtgctgcatatcaacttgtgcattctggaatatcacctggtttacttgaagct
gttattaggcatgcaaacatggaacatcgattgggcaacttggaagatgcattctcacta
tatgaacaagcaatagccactgaaaaagggaaagagcagtctcaaacattgccaatgctc
tttgtccaatatgcacgttttgtttacttggttgctggaaatgcggaaaaagctagagag
gttctagttgaagccattgataatgcacaactatcaaagccacttttagaggccttaatc
catctagaggctattcagtcggctgctaagagaattgactatttggactcattggttgaa
aagtttatattgcccatccttgagaaccccaatcctgcaagttctgctgacagagaagaa
ctatctggtatatttttggagttcttgaatctctttggagatgcacagtctatcaagaaa
gctgaagaccggcatgcgaagctctttttacgccagaggtacacatcagagttgaggaaa
cgacatgctgaagactttctagcttcagacaaggcaaagctggttaaatcttatccgggt
gttccctcaacaacacaatcgttgatgggtgcatacccaactgcacagaaccagtggact
gctggatatgggctacaacctcaagcttggtcccaggcatcacaggcaggacaacagtgg
aaccctggctatgctcaacaggctggatatggtgggtatactggttatggcagcggctat
actcatccccagattcccagttcaactgcacaaagcactgcttatggctcttatcctcca
acatatcctgcccagaccatcccacaccagagctatgcccaaccagccacagcagcagca
tttgctccaactcagcaacaagcaccagcacagcaggcttactatgggacttattattga
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