Telopea speciosissima (New South Wales waratah): 122654343
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Entry
122654343 CDS
T07910
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122654343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tss03021
]
122654343
03036 Chromosome and associated proteins [BR:
tss03036
]
122654343
Transcription machinery [BR:
tss03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122654343
Chromosome and associated proteins [BR:
tss03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122654343
PBAF complex
122654343
GBAF(ncBAF) complex
122654343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
YEATS
Motif
Other DBs
NCBI-GeneID:
122654343
NCBI-ProteinID:
XP_043704337
LinkDB
All DBs
Position
3:complement(3468279..3471136)
Genome browser
AA seq
567 aa
AA seq
DB search
MLACYVRMSSNNNHITKSVGGAPSPFGNAGMVSPSMPMNHTTQVHSQSQAQTQGGAHFQG
QFQSQLQSQAQVLAQAQVQAFAQVQSQAQAQAHAAQVQAAHAQFQAQLQAQAQSLAQTQT
AGIGHMGASSPSLSTPSTANAKRVLQKPPARPPGPATTNTVSPFRTMELTPAARRKKRKL
PEKQIPDRVAALLPESALYTQLLEFEARVDAALTRKKVDIQESIKNPPCIQKTLRIYVFN
TFANQTRTIPDKQNSEPPSWSLKIVGRILEEGVDPDPSGVSQKPNSSYPKLSSFFKRITI
NLDPSLYPENPTIIWESARSPAPHEGFEVRRKGDKEFSVNIRLEMNYVPEKFKLSPALME
LLGIEVETRPRVIAAIWHYVKARKLQNPNDPSLFACDPALRKVFGEEKMKFAMVSLKISQ
HLSPPQPIHLEHTIRLSGPSPAGNACYDVLVDVPFPLQKEMSAFLANIEKHKEIETCDEA
ICAAIKKIHEHRRRRAFFLGFSQSPVEFVNALIASQSRDLKLVAGEASRNAEKERRSDFY
NQSWVEDAVIRYLNRKPAAGSDAPGST
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgttagcctgctacgtaagaatgtcctcgaataataatcacataacgaagagtgttggg
ggtgctccatccccttttggtaatgctgggatggtctcgccatcaatgccgatgaatcac
acaactcaggttcactctcagtcacaagctcaaacgcaagggggggcacacttccaagga
cagttccagtctcaactccagtcccaagcccaagtcttggcgcaggctcaagtccaagct
tttgcccaggtgcagtctcaagctcaagcacaagctcatgcagctcaagttcaagcagct
catgcccaattccaagcccagttacaagctcaagcacagtcccttgcccagacccaaacc
gctggaattgggcatatgggtgcctcgtctccctccctttcaacacccagcacagcaaat
gcaaagcgggttttgcaaaagcctccagcgcgtcctcctggacctgctaccactaatacg
gtttccccattcagaactatggaactaacccctgctgctcgaaggaaaaagcggaagctt
cctgagaagcagattccagatcgcgtggcagcccttctgcccgagtctgctctatatacc
cagctacttgagtttgaggcacgggtggatgctgctctcacaagaaagaaggttgatatc
caggaatctattaaaaaccctccgtgtattcagaagactctccggatttatgttttcaac
acttttgccaatcagacccgcacaatccctgataagcaaaattctgagccgccttcttgg
tcgcttaaaatagttgggaggatattggaagaaggggttgatccagacccttctggtgtg
agccagaaaccaaactcatcctatcccaagttatcttcctttttcaagagaatcaccatc
aacttggaccctagcctctatcccgaaaaccccactattatatgggagagtgctcgatcg
cctgcaccacatgagggctttgaggtgagaagaaaaggcgataaggaatttagtgtgaat
atacgcctggaaatgaattatgtgcctgagaaatttaagctttcacctgctctgatggaa
cttctgggcattgaggttgaaacacgcccgagagttatagctgcaatttggcattatgtg
aaggctagaaaactgcagaatccaaacgacccttctctctttgcttgtgatccagctctt
cgaaaagtttttggcgaggagaagatgaaatttgccatggtttcactaaaaatatcacag
catctttcgccgcctcagcctatccatcttgagcatacaatccggctatctggtcccagc
ccagctgggaatgcttgctatgatgtattggttgatgttccgtttccattacagaaagag
atgtctgctttcttggccaacatagagaagcacaaagagattgagacctgtgatgaagct
atctgtgctgctattaagaagatccatgagcatcgtagaagacgagcattctttcttggg
ttcagtcaatctcctgtggagtttgttaatgctctaattgcttcacaaagcagagacttg
aagcttgttgctggggaagcgagtcgcaatgctgaaaaggagcgtcgatctgacttctac
aaccaatcatgggttgaagatgctgttattcgttatctgaaccgcaagccagctgccgga
agtgatgctcctggaagcacatga
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